Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14a10r
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 128 6e-31
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 102 6e-23
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 101 1e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 95 1e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 88 1e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 78 1e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 78 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 75 1e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 73 6e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 72 8e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 1e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 68 1e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 67 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 67 3e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 66 7e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 65 1e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 64 2e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 63 4e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 63 5e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 61 2e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 1e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 5e-08
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 52 1e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 46 6e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 42 7e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 42 7e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 42 7e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 42 1e-04
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.31
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.3
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.2
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 2.9
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.8
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 6.8
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 6.8
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 6.8
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.8
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 6.8
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 128 bits (310), Expect = 6e-31
Identities = 55/96 (57%), Positives = 79/96 (82%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
RD VL +F+ G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+HRIGRTGR+ +KG
Sbjct: 408 RDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKG 467
Query: 583 TSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 476
T+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 468 TAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 102 bits (244), Expect = 6e-23
Identities = 47/88 (53%), Positives = 64/88 (72%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HRIGRTGR+ +KG
Sbjct: 455 RLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKG 514
Query: 583 TSYAFFTPSNSRQAKDLVSVLQEANQII 500
T+ FFTP + A +LV+VL++A Q I
Sbjct: 515 TAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 101 bits (242), Expect = 1e-22
Identities = 48/96 (50%), Positives = 66/96 (68%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R+ L F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+HRIGRTGR+ + G
Sbjct: 469 RERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 528
Query: 583 TSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 476
+ AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 529 QAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 94.7 bits (225), Expect = 1e-20
Identities = 40/98 (40%), Positives = 61/98 (62%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+GRTGR+ G
Sbjct: 707 RDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTG 766
Query: 583 TSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 470
+ F TP + A D+ L+ + Q + +LQ++A +
Sbjct: 767 VAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 87.8 bits (208), Expect = 1e-18
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R+E L +F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIGRTGR+ + G
Sbjct: 327 REEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTG 386
Query: 583 TSYAFFTPSNSRQAKDLVSVLQEA 512
+ FFT + K + V++ +
Sbjct: 387 QAVTFFTKEDGEYIKLIAGVMRSS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/77 (42%), Positives = 51/77 (66%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
RD ++ F++G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIGR+GR KG
Sbjct: 299 RDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG 358
Query: 583 TSYAFFTPSNSRQAKDL 533
+ F T + R +D+
Sbjct: 359 VAINFVTNEDVRILRDI 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIGR GR KG
Sbjct: 297 RDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKG 356
Query: 583 TSYAFFTPSNSRQAKDL 533
S F T + R +++
Sbjct: 357 VSINFVTNDDVRMMREI 373
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R+ + Q + A ILVATD+A RG+D+ + V+N++ S EDY HRIGRTGR+ G
Sbjct: 555 RERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSG 614
Query: 583 TSYAFFTPSNSRQAKDLVSVLQEA 512
T+ F P ++ DL +L +
Sbjct: 615 TAITFLGPEDTDVYYDLRVLLSRS 638
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 72.5 bits (170), Expect = 6e-14
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = -2
Query: 751 LYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYA 572
L +F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+GRT R+ G S +
Sbjct: 301 LGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESIS 360
Query: 571 FFT 563
T
Sbjct: 361 IVT 363
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 72.1 bits (169), Expect = 8e-14
Identities = 35/63 (55%), Positives = 42/63 (66%)
Frame = -2
Query: 751 LYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYA 572
L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIHR+GRT R+ G S A
Sbjct: 328 LNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIA 387
Query: 571 FFT 563
T
Sbjct: 388 LVT 390
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = -2
Query: 742 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 563
FK+ I VATDV RG+D++ + VIN+D P+S + Y+HR+GR GR +KG + F +
Sbjct: 341 FKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSS 400
Query: 562 PSNSRQAKDLVSVLQEAN 509
Q D + E N
Sbjct: 401 SEEDSQILDKIQERFEVN 418
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 68.1 bits (159), Expect = 1e-12
Identities = 27/67 (40%), Positives = 44/67 (65%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R+ V + F+ G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR+GR +G
Sbjct: 320 RNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRG 379
Query: 583 TSYAFFT 563
+ +F +
Sbjct: 380 LAISFIS 386
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 66.9 bits (156), Expect = 3e-12
Identities = 28/60 (46%), Positives = 43/60 (71%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+GRT R+ G
Sbjct: 543 RVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 66.9 bits (156), Expect = 3e-12
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSK 587
R ++F IL+ T+VAARGLD+ + +++ +D P+ DYIHR+GRT R +K
Sbjct: 375 RTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGT 434
Query: 586 GTSYAFFTPS 557
G S F PS
Sbjct: 435 GKSLMFLAPS 444
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 65.7 bits (153), Expect = 7e-12
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = -2
Query: 739 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 560
++ + IL+ TDVAARGLD+ + V+ +D P S++DY+HRIGRT R+ G + F P
Sbjct: 493 EDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLP 552
Query: 559 SNSRQAKDLVSVLQEANQIISP 494
S L S + AN + P
Sbjct: 553 KESEYINLLKSSV-SANILEQP 573
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R + L +FK +LV TDVAARG+D+ + +VI++ P++++ Y+HR GRT R+ G
Sbjct: 428 RLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDG 487
Query: 583 TSYAFFTPSNSRQAKDL 533
S P Q K L
Sbjct: 488 VSILMCGPKELSQLKRL 504
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/90 (33%), Positives = 53/90 (58%)
Frame = -2
Query: 742 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 563
F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+GRT R+ G +Y+
Sbjct: 392 FRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVR 451
Query: 562 PSNSRQAKDLVSVLQEANQIISPQLQSMAD 473
++ DL L S Q+++ +D
Sbjct: 452 AEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 63.3 bits (147), Expect = 4e-11
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R + F++ ++ IL ATDV ARG+D I V+ P++++DYIHRIGRTGR+ G
Sbjct: 332 RRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTG 391
Query: 583 TSY 575
+Y
Sbjct: 392 EAY 394
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.9 bits (146), Expect = 5e-11
Identities = 31/79 (39%), Positives = 39/79 (49%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R EV +F R +L TD+ ARGLD + +VI D P + YIHR+GRT R G
Sbjct: 324 RTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSG 383
Query: 583 TSYAFFTPSNSRQAKDLVS 527
+ PS K L S
Sbjct: 384 NALLLLLPSEEAFLKRLES 402
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+ +G
Sbjct: 476 RKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREG 535
Query: 583 TSYAFFTPSNSRQAKDLVSVLQ 518
++ LV L+
Sbjct: 536 FAWTLVQSHEGHHFSKLVKQLR 557
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSEDYIHRIGRTG 602
RD ++ F+ G + +LV T+V ARG+DV + V+N+D P + Y+HRIGRTG
Sbjct: 391 RDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTG 450
Query: 601 RSKSKGTSYAF 569
R G S F
Sbjct: 451 RFGRVGVSINF 461
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -2
Query: 697 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 554
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.8 bits (121), Expect = 5e-08
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = -2
Query: 739 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 560
K + ++L TD+A+RGLD+ + +V+ D P + + HR GR GR+ G +
Sbjct: 306 KSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLND 365
Query: 559 SNSRQAKDLVSV 524
+ ++L+ V
Sbjct: 366 GREEEYEELLRV 377
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
++E + QF++G + L+AT + GLD+ + +I +D S + R+GRTGR K KG
Sbjct: 481 QNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR-KRKG 539
Query: 583 TSYAFFTPSNS----RQAKDLVSVLQEANQIISPQLQSMADR 470
Y T +AKD LQ+ I+S + S++++
Sbjct: 540 YIYMLLTRGKEEAKWERAKDAYRTLQD--NIVSGRGLSLSEK 579
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = -2
Query: 757 EVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 590
E + QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR KS
Sbjct: 522 ETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKS 577
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 554
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 553 S 551
S
Sbjct: 1530 S 1530
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -2
Query: 757 EVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 587
+ L++FK G+ ++L+AT VA G+DV VI F+ + Y+ GR SK
Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASK 470
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 554
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 553 S 551
S
Sbjct: 1530 S 1530
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 584
R + +++ G I+VAT G+D +++VI+ +P S E Y GR GR
Sbjct: 782 RQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPA 841
Query: 583 TSYAFFT 563
F++
Sbjct: 842 HCIMFYS 848
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 646 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 494
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -2
Query: 763 RDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 599
R ++ + G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 599 RRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVINFDY 647
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 733 GRASILVATDVAARGLDVDGIKYVIN 656
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 266 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 379
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 591 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 475
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 721 ILVATDVAARGLDVDGIKYVIN 656
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 721 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 560
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 679 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 545
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 685 DVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS---KGTSYAFFTPSNSRQAKDLVSVLQE 515
++D I+ + F+ N +D I G+ K KG + A PSN+ ++ + +
Sbjct: 203 ELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 514 ANQIISPQLQSMAD 473
I+SPQ + D
Sbjct: 263 RISIVSPQSGTTRD 276
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 736 EGRASILVATDVAARGLDVDGIKYVIN 656
EG +VAT+VA + + I+YV++
Sbjct: 725 EGHRMCIVATNVAETSITIPNIRYVVD 751
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 629 LHPSY-WENWTFKIKRNIICFLYPFKFP 549
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 688 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 578
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,832
Number of Sequences: 5004
Number of extensions: 58518
Number of successful extensions: 176
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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