Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14a04r
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    31   0.13 
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    28   1.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.8  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   8.9  

>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -3

Query: 399 ILHNHSFIKESKSKLNCNKYYANILLNIY*FISRSNMNKAQFVLNLKDELG 247
           + H+ + +  SKSK+   +YY +ILL      +  +++ A  ++NL+D+ G
Sbjct: 310 VFHHIALLASSKSKMEAARYYMDILLQN--LTATQSVDVAAQIINLQDDHG 358


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/83 (27%), Positives = 35/83 (42%)
 Frame = -3

Query: 471 K*FLFYLFSGFN*NYYNSLFPRLHILHNHSFIKESKSKLNCNKYYANILLNIY*FISRSN 292
           K FL +LF      YY+ L   LHI  N+     S S  N  +   ++L     F  +  
Sbjct: 295 KLFLIFLFLKNKNVYYSRLDEWLHITLNYGLALRSGSN-NQEEEVLHLLYKYLLFSPKFP 353

Query: 291 MNKAQFVLNLKDELGVFLGNYNL 223
            +  Q+V+    +  +   NYNL
Sbjct: 354 KSLLQYVITFFSKPNITEENYNL 376


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 282  AQFVLNLKDELGVFLGNYNLKKNN 211
            A F LNLK E+ + L N N+K +N
Sbjct: 1043 ADFRLNLKFEIELLLNNLNVKMDN 1066



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 149  CSLFLNLVQHHICASTINNVNTYQA 75
            C LF +L +H +  S+ NNV+T +A
Sbjct: 2069 CRLFDSLHEHVMAPSSANNVSTEEA 2093


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 399 ILHNHSFIKESKSKLNCNKYYANILLNIY*FISRSNMNK 283
           +LH    IK S ++L C K  ANI  N+Y  I R    K
Sbjct: 227 LLHPLRSIK-STAELECMKEAANISSNVYREIMRKRFEK 264


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 423 NSLFPRLH--ILHNHSFIKESKSKLNCNKYYANILLNIY*FISRSNMNKAQFVLNLKDE 253
           NS  PR +  +L +H   ++   +L  +  YAN+ LNI  F  ++    A+ V N+ DE
Sbjct: 392 NSKSPRNYEIVLLDHGLYRDIPHELQVD--YANMWLNIINFNEKNLKFYAKKVANVSDE 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,514
Number of Sequences: 5004
Number of extensions: 58750
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)