Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14a04f
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...   110   2e-25
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       27   2.1  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   4.9  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   4.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   6.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.4  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   6.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   8.5  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    25   8.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   8.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   8.5  

>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score =  110 bits (264), Expect = 2e-25
 Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
 Frame = +2

Query: 206 LNIFTLNCWGIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLP 385
           L + + NCWG+  VSK + ER +A+   L K +++IV LQEVWS  D+  ++  +   L 
Sbjct: 9   LRVLSFNCWGLRFVSKYRTERLKAVGEKLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLV 68

Query: 386 YSYYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIKF-GE 562
           YS +F+S  +G+GL +FSK+ I +   +++PLNG       GDW+ GKGV    ++    
Sbjct: 69  YSRFFHSAAMGAGLAMFSKFPIIESSMNKYPLNGRPQAFWRGDWYVGKGVATASLQHPSG 128

Query: 563 RLINVYCTHLHA 598
           R+I+++ THLHA
Sbjct: 129 RIISLFNTHLHA 140


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 310 YSMFARSL---E*KRLPIFKGEPKECTPIFLLLLQWSSRFRSLCIF*MGNPRCLLPSVAL 480
           + +F  SL   E  R+P  + +P +CTP+FL +   S R    CI        LL ++  
Sbjct: 59  HHLFVMSLITREYMRMPALRLKPSQCTPLFLAVYT-SLRDAYACIHTHSQEAILLSTLFA 117

Query: 481 EWVHTQNTSW 510
           +  H   T +
Sbjct: 118 DSDHFSATGF 127


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 492 YTKYIMVTGLEEKVWVSVGSSLGRDSSMSIAHIFT 596
           + KY M+TG+  +V +S+G ++G     +I  I T
Sbjct: 433 HPKYHMITGVVVQVGISIGETVGSICGGAIFDITT 467


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 158 LPKINNISFDTDMEFTLNIFTLNCWGIPVVSKNKKER 268
           LP+  +I+ DT  +    +F L   GIP++   +++R
Sbjct: 323 LPRYTSITNDTSQDIGAIVFLLLHTGIPIIYYGEEQR 359


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 332  WSEKDYLYLKENL 370
            W+E++YLYL+E L
Sbjct: 1417 WAEREYLYLEEEL 1429


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 180  HLIPIWNSHSIFSP*TVGVYQWC 248
            HL P W   S   P  + VY+WC
Sbjct: 957  HLFPSWVKPSDSEPPPLLVYKWC 979


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 230 WGIPVVSKNKKERYEAIS 283
           WGI V S NKK  +E+++
Sbjct: 386 WGIMVASHNKKTMFESVN 403


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 437 KIHRDLNLELHCKSSKNMGVHSLGSPLNIGNLFHSKLL 324
           K  RDLN++      +N G   L S  N+ NL+ S  L
Sbjct: 849 KFKRDLNVQRSLSPIQNAGSAMLPSFSNLPNLYSSSYL 886


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +2

Query: 293 LKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSYYFYSGVLGSGLCVFSKW 445
           L+ EH I+ ++  +++K+   + +  +         Y G+L   +C FS W
Sbjct: 600 LQEEHTILSIKASYNKKESHLINQAYET---QEAQVYKGMLKCSVCNFSNW 647


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 488 YIHKIHHGDWFGGKGVGL 541
           YIH+I  G  FG KGV +
Sbjct: 342 YIHRIGRGGRFGRKGVSI 359


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 323 QEVWSEKDYLYLKENLKNVLPYSYYFYSGVLG 418
           QE W EK    LK+  KNV   + +  S +LG
Sbjct: 690 QEFWQEKSNSLLKKVEKNVDLNAVFLISQILG 721


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 517 VWRKRCGSLSDQVWGETHQCLLHTSSR 597
           ++ K+  S+SD+ W    +CL   +SR
Sbjct: 426 IYDKKARSVSDEAWSFITKCLTEPTSR 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,965
Number of Sequences: 5004
Number of extensions: 60180
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)