Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14a04f
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1082 + 34399798-34399914,34400548-34400829,34401197-344016... 32 0.40
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267... 29 2.8
05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352 29 3.7
04_03_0534 - 16845094-16845511,16846180-16846211 29 3.7
02_01_0002 - 9542-9762,11085-11196,11328-12575 28 5.0
01_03_0207 - 13790801-13792057 28 5.0
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 5.0
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 28 6.5
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 27 8.7
05_04_0171 - 18701946-18702242,18702621-18702768,18703665-187037... 27 8.7
01_05_0812 + 25444351-25444658,25444967-25445231,25445303-254453... 27 8.7
>01_06_1082 +
34399798-34399914,34400548-34400829,34401197-34401633,
34401800-34401959,34402034-34402147
Length = 369
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 425 DLNLELHCKSSKNMGVHSLGSPLNIGNLFHSKLLAN 318
D LELH SK + HS+GSP++ + KLL N
Sbjct: 156 DEGLELHISESKALENHSVGSPVSPQLILFPKLLIN 191
>03_05_0829 +
28025760-28025846,28026366-28026473,28026721-28026752,
28026823-28026873,28027528-28027589,28027663-28027924,
28028634-28028899,28029138-28029232,28029772-28029948
Length = 379
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 377 VLPYSYYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIH 505
VL Y Y L SG+ +F+KWV+ +F ++P + IH
Sbjct: 8 VLTYLYLLIYVCLSSGVILFNKWVLSPKYF-KFPFPITLTMIH 49
>05_03_0193 + 9543565-9543691,9544016-9544202,9544956-9545352
Length = 236
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 504 IMVTGLEEKVWVSVGSSLGRDSSMSIAHIFTQ 599
I V GLEE++ V GSSL R S S+A ++ Q
Sbjct: 129 IHVVGLEERMRVKNGSSLPRTSLSSMAILWQQ 160
>04_03_0534 - 16845094-16845511,16846180-16846211
Length = 149
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 517 PVTMMYFVYVPIQGPLMEEDILD--YPFRKYTE 425
P+ + + VY+P + P+M E ILD + + +Y E
Sbjct: 83 PLILAFHVYIPDEVPMMVEGILDISHSYNRYIE 115
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 167 INNISFDTDMEFTLNIFTLNCWGIPVVSKNKKERYEAISTY-LLKSEHNIVCLQEVWSEK 343
+N+IS++ D E + F + + P + + + +S Y L+ +HN++ + E W K
Sbjct: 348 LNHISYE-DFEKMITTFEKDAFNNP---EGTSDLDQILSRYPTLEKDHNVLAVHEYWINK 403
Query: 344 DY 349
Y
Sbjct: 404 RY 405
>01_03_0207 - 13790801-13792057
Length = 418
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 389 SYYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGY 490
S++ SG+ G GLC FS W+++ QWP + +
Sbjct: 261 SFWGISGLSG-GLCYFSSWILK-----QWPKDSF 288
>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 233 GIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENL 370
GI N+KE +EA+++ + ++ N + L V S D+L + ++
Sbjct: 966 GITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADFLSARNSI 1011
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 598 CVKMCAIDIDESLPKLDPTETHTFSSKPVTMMYFVYVPIQGPLMEEDILDYPF 440
C K C D D+S+ KL T + + V M V+ P +EED D+P+
Sbjct: 63 CRKCCTEDSDDSISKL----TFSGAIIEVCMRKLVFYPEIVGFLEEDKDDFPY 111
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 266 RYEAISTYLLKSEHNIVCLQEVWSEKDYL 352
R E I LL +I+CLQEVW D L
Sbjct: 77 RNEKIIDRLLADCSSIICLQEVWLGNDEL 105
>05_04_0171 -
18701946-18702242,18702621-18702768,18703665-18703786,
18704360-18704429,18704922-18704971,18705107-18705156,
18705296-18705359
Length = 266
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 KERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSYYFY-SGVLGSGLCVF 436
K R +A+ + L E +++C+QE+ E D Y K+N++N S Y SG G +F
Sbjct: 57 KTRSKAVLSELKSFEADLMCIQEL-DEYDTFY-KKNMENSGYSSIYIQRSGDKRDGCGIF 114
Query: 437 SK 442
K
Sbjct: 115 YK 116
>01_05_0812 +
25444351-25444658,25444967-25445231,25445303-25445384,
25446139-25446212,25446308-25446368,25446482-25446624
Length = 310
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 233 GIPVVSKNKKERYEAISTYLLKSEHNI 313
GIP V++NKK +Y ++ L+ H I
Sbjct: 32 GIPCVARNKKVKYSSLCVGLVMDLHGI 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,491
Number of Sequences: 37544
Number of extensions: 346061
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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