Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14a04f
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical pr...   129   2e-30
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    28   5.9  
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical
           protein T27F6.6 protein.
          Length = 434

 Score =  129 bits (311), Expect = 2e-30
 Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 5/137 (3%)
 Frame = +2

Query: 206 LNIFTLNCWGIP----VVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLK 373
           L + TLN W +P    + S ++  R   I  Y++   ++IV LQE+WS  D++ L E + 
Sbjct: 39  LRVVTLNAWCLPQPWPIGSTDRVHRLNKIGQYMIDELYDIVGLQELWSYYDFVRLSEQVS 98

Query: 374 NVLPYSYYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIK 553
           +V PY +YF+SG  GSG+CVFS+  I     +++ LNG+ H IH GDWFGGK VGL  I+
Sbjct: 99  SVYPYFHYFHSGFTGSGVCVFSRHPIVSTLTNRYSLNGFAHHIHRGDWFGGKVVGLTEIE 158

Query: 554 F-GERLINVYCTHLHAE 601
             G+  +N Y THLHAE
Sbjct: 159 IDGDLRVNFYTTHLHAE 175


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 268 SFFLILRHHWYTPTVQGENIECEFHI 191
           SFFLI+RH W+    +G + +  FH+
Sbjct: 71  SFFLIVRHGWF--QTEGNSSQLNFHM 94


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 368 LKNVLPYSYYFYSGVLGSGLCVFSKW--VIQDVFF 466
           L +++P   Y + GV    LCV  KW  +I D FF
Sbjct: 222 LDDIIPKKQYSHYGVYQIKLCVEGKWEVIIVDDFF 256


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 368 LKNVLPYSYYFYSGVLGSGLCVFSKW--VIQDVFF 466
           L +++P   Y + GV    LCV  KW  +I D FF
Sbjct: 222 LDDIIPKKQYSHYGVYQIKLCVEGKWEVIIVDDFF 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,864
Number of Sequences: 27780
Number of extensions: 323697
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)