Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14a03f
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 1.8
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 2.3
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 27 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 5.4
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 5.4
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 5.4
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.4
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 357 PIRIIALLTFSL-PTLKCAISISITTRAEAF-FS*AWTWHTTIMELVWYESIGAVTFPFY 184
P+RI ++ T+S P+ C+ + ++F + T+HTT + I ++T P +
Sbjct: 93 PLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152
Query: 183 TFIFDSYAIYSETLHS 136
+++ + HS
Sbjct: 153 ASVYNDLPLSPTVKHS 168
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/76 (26%), Positives = 28/76 (36%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 324
C+ + Y +GK YC + F RC C G + F Y NG Q W
Sbjct: 209 CYTVFGPNDSYYEYEGKVYCHYHY-STLFAARCCGCDGPILRQF---VEVYRNGVSQNWH 264
Query: 325 GKCQQCYDSYGNFVCR 372
C Y + +C+
Sbjct: 265 VPCHMIYKFWNVKLCQ 280
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 586 PRYSRTPNNGYSRVSSYSI 642
P YSRTP+ YS+ SS ++
Sbjct: 619 PNYSRTPHETYSKASSKNV 637
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 74 FTISKLIFEQCHILYLTDS 18
FT++KL+ QCH L+L S
Sbjct: 309 FTLAKLVATQCHRLWLVQS 327
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/103 (24%), Positives = 42/103 (40%)
Frame = +1
Query: 19 ESVKYNM*HCSKISFEIVKCKSGSRSLVFLCSRAPSLSVTMKCFAINCIGVEYECIKGKC 198
ES+ + SK++ E +C++ L+ C + +C + C G +E I KC
Sbjct: 319 ESIHARCSNISKVNTEPFRCENVCDELL-PCGEH---TCKKRCHSGLC-GACFEPINAKC 373
Query: 199 YCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQG 327
YC H + PC L + NG+++ W G
Sbjct: 374 YCG-------LHSKTYPCSSLPSPSIS---KKDENGSVKEWFG 406
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 298 GNGTLQCWQGKCQQCYDSYGNFVCRDGIDQILLISTTQI-VMGSA 429
G+GT Q + C D ++VCRD I ++ST + +GSA
Sbjct: 1119 GHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSA 1163
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 263 EKNASALVVIDMEMAHFNVGKENVNN 340
+K+ + +++D+E A N +EN+NN
Sbjct: 325 KKSKGSALMVDIEAADINKTEENINN 350
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 378 HRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHR 494
HR AD D+N + +R S+I++ LQI DY +
Sbjct: 133 HRAFKADVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSK 171
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 305 PFPYLLQQGPKHFSPRPGHGTQRS 234
PFP+ +QQ P H P T S
Sbjct: 333 PFPFSIQQPPLHLEPPLSSNTLNS 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,474
Number of Sequences: 5004
Number of extensions: 66334
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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