Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p22r
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   2.0  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   2.0  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   4.7  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   6.2  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 423 PRPVPDGTPSRRDTRYSVRNIITKKKNIQNVKHECKEHYCIIIQEKIRPINTEYSSH 593
           P PV   TP+  +T  S R  +    N+  V   C++    +++E ++ I  +Y S+
Sbjct: 159 PEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLSEMLRE-LKDIEDDYGSN 214


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 325 WSGDRSGDCLFQSIQTITNP*TGKRFRKFVK 417
           W+G + GD    S+  +TNP TGKRF   VK
Sbjct: 115 WAG-QLGDGRVVSLCELTNPETGKRFEIQVK 144


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 488 NDITYAVSRVSSAWSTVRYWSWSRFTNFLNLL 393
           ND+ Y  S      S ++YW   ++ N L+LL
Sbjct: 376 NDVAYLQSAYLEQISALQYWKQGQYENSLSLL 407


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 555 EKIRPINTEYSSHLDYRFTIL 617
           E+  P N+EY S LD+R  IL
Sbjct: 192 EQFSPFNSEYESLLDFRALIL 212


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 355 FQSIQTITNP*TGKRFRKFVKRLQDQYLTVLQADETRDT 471
           F +  ++ NP +G++ R+ VK L  + L     DET  T
Sbjct: 33  FGTSSSLRNPGSGRQIRRVVKVLDGRVLVFDPPDETTAT 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,973
Number of Sequences: 5004
Number of extensions: 51695
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)