Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p22r
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 231 NTRYCITP 208
           NTRYC+TP
Sbjct: 144 NTRYCLTP 151


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 231 NTRYCITP 208
           NTRYC+TP
Sbjct: 197 NTRYCLTP 204


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 320 ACGPGTEAATVYFSQSRQL 376
           +CGPG  AA    S+ R +
Sbjct: 155 SCGPGAAAAAALLSKRRSV 173


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 244 LAKNERKPSKTR-DNHTPRNNLLVNRRLWSGDRSGDCLFQSI 366
           +A   R    T  +N  PR N+L+ R      R  +C+  S+
Sbjct: 225 IASRHRNLEATESENVRPRRNVLIERAKSIRARRTECVTNSV 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,878
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)