Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p22f
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    42   9e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.52 
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 333 SLEPIPSDNMSVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAAT 512
           ++E +P+   S++ Y +     L  Y++LS++IGG +A Q+  V  AF    + + +A  
Sbjct: 98  AVEAVPA---SISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALK 154

Query: 513 KAKP--SQAEEMQLLTPTSEQISAIQQYRE 596
             KP     E ++ L P   ++  I   R+
Sbjct: 155 AQKPDMDSPELLEFLKPIQSELLTITNIRD 184


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 147 GNEVEGTAAAHGSASDLETLIERLERVTSRLERL 248
           G EVEG     GSAS +  L++  E  + R+E L
Sbjct: 808 GLEVEGIYRISGSASQVRVLVDEFENGSIRMEHL 841


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 484 NPATYNWRQQKPSLPKLRK 540
           NP   +WR  KP +PK  K
Sbjct: 473 NPKAVSWRSAKPVVPKFNK 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,147
Number of Sequences: 5004
Number of extensions: 38076
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)