Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p22f
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    30   1.2  
03_05_1108 - 30458827-30459411,30459523-30459615                       30   1.6  
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424...    28   4.9  
01_07_0133 + 41335752-41336021,41336123-41336290                       28   6.5  
01_06_1443 - 37399670-37400380                                         27   8.6  

>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 108 ISLNTIGYFCRFSGNEVEGTAAAHGSASDLETLIERLERVTSRLERLP 251
           +S + I   CRF G E+   AA  G  +  E + E +++  S+++RLP
Sbjct: 457 LSEDLITEMCRFGGAEIHPVAAFIGGVASQEVIKELIKQ--SKIDRLP 502


>03_05_1108 - 30458827-30459411,30459523-30459615
          Length = 225

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = -1

Query: 237 IAR*RVPNARSASRDPMPSREQLRCPRLRYQKNDKNIL*CLMRSLTV 97
           +AR RV  ARSA R   PS   L  PRLR   +   I  C +R L V
Sbjct: 36  LARLRV--ARSAGRRAPPSFRSLSPPRLRTSASTATITPCRLRRLRV 80


>03_05_0744 +
           27336697-27337131,27337329-27337787,27340852-27342418,
           27342641-27343044
          Length = 954

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 389 PGSPPRLSPTVAADWRRRCYSS 454
           PGSPPR +P  +A W   C  S
Sbjct: 91  PGSPPRAAPAPSACWSALCRRS 112


>01_07_0133 + 41335752-41336021,41336123-41336290
          Length = 145

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 383 PCPGSPPRLSPTVAA-DWRRR 442
           PC G P R+S T AA  WRRR
Sbjct: 21  PCSGRPVRVSATPAAGGWRRR 41


>01_06_1443 - 37399670-37400380
          Length = 236

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 356 QHECQRISRPCPGSP--PRLSPTVAADWRRRCYSS*PRECC 472
           +H+   + +P  G P  P + P  AA  RRRC +     CC
Sbjct: 6   EHKVDHLDQPFYGPPVLPPVEPLSAAAARRRCVADPYALCC 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,422
Number of Sequences: 37544
Number of extensions: 291315
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)