Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13p22f
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 57 1e-08
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 54 1e-07
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 38 0.007
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 28 5.8
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 56.8 bits (131), Expect = 1e-08
Identities = 38/136 (27%), Positives = 59/136 (43%)
Frame = +3
Query: 189 SDLETLIERLERVTSRLERLPLLRXXXXXXXXXXXXXXVSLNTPPPQESLEPIPSDNMSV 368
S E ++RLE VTSRLE + + S P V
Sbjct: 2 STQEDFLKRLESVTSRLEAIAGQKPALAPKPTNLGGPSASAAASAGDSGEVPA-----HV 56
Query: 369 NGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAATKAKPSQAEEMQL 548
Y D ++ PL + +L+ Q+GGD+A V A F + Y+ AA K++PS E ++
Sbjct: 57 RAYDDAIEEPLANWSKLTDQLGGDLAAVKPKVLAMFASMRNYLWSAAGKSEPSAEEAQKM 116
Query: 549 LTPTSEQISAIQQYRE 596
LTP + I +++
Sbjct: 117 LTPVINLLGEINNFKD 132
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +3
Query: 366 VNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAATKAKPSQAEEMQ 545
V Y D ++ PL + +L+ Q+GGD+A V A F + Y+ AA K++PS E +
Sbjct: 817 VRAYDDAIEEPLANWSKLTDQLGGDLAAVKPKVLAMFASMRNYLWSAAGKSEPSAEEAQK 876
Query: 546 LLTPTSEQISAIQQYRE 596
+LTP + I +++
Sbjct: 877 MLTPVINLLGEINNFKD 893
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +3
Query: 342 PIPSDNMSVNGYQDLVQGPLRAYLQLSQQIGGDVATQANLVNAAFQAQSRYIQLAATKAK 521
P+ + +N Y D + L ++ LS +IGGD+ + + F ++ +A + K
Sbjct: 31 PVDATPQIINLYDDAICENLVSFYDLSAKIGGDLNRLGCMTRSLFFTHRYFLWIACGRKK 90
Query: 522 PSQAEEMQLLTPTSEQISAIQQYRE 596
E L+ S++I A ++E
Sbjct: 91 ADNDEFATLVNDLSKEIVAFSDFKE 115
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 105 VISLNTIGYFCRFSGNEVEGTAAAHGSA---SDLETLIERLERVTSRLERL 248
++S I YFCRF N+ + A G A SDL+ + LE + LE L
Sbjct: 340 LMSYQKIAYFCRFKRNDEDALRAYQGMALVYSDLDEHSKSLEMFKNLLELL 390
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 132 FCRFSGNEVEGTAAAHGSASDLETLIERLERVTSRLER 245
FCR GN A L T IERLE+ L +
Sbjct: 381 FCRCDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNK 418
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 132 FCRFSGNEVEGTAAAHGSASDLETLIERLERVTSRLER 245
FCR GN A L T IERLE+ L +
Sbjct: 381 FCRCDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNK 418
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 132 FCRFSGNEVEGTAAAHGSASDLETLIERLERVTSRLER 245
FCR GN A L T IERLE+ L +
Sbjct: 381 FCRCDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNK 418
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -1
Query: 573 ISVRWSESEAAFPQLGKAWLLLPPVVCS-GIALEKQHSRG*LE*QRLRQSAATVGDRRGG 397
I +S +A F GK P+V S G + E Q S G + Q+ +
Sbjct: 721 IGQSFSALDAFFVSNGKIITTPAPIVSSSGASQEGQKSAGGSMTLQPSQTVSVTTTEEPM 780
Query: 396 DPGQGLDIR*HSCCPMVLVRAILGAVVCSARLEK 295
D L I C +VLV A++ AVVC + K
Sbjct: 781 DESTNLMIFIGIGCGIVLVSALIVAVVCFYKRNK 814
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,540
Number of Sequences: 27780
Number of extensions: 230524
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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