Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13p21f
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 141 6e-35
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 67 2e-12
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 58 1e-09
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 29 0.39
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 1.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 3.7
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 4.8
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 8.5
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.5
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 141 bits (342), Expect = 6e-35
Identities = 71/138 (51%), Positives = 88/138 (63%)
Frame = +3
Query: 186 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGG 365
I LY + + GE G FL +TSPY WG LGIA VA ++GAA GI G SI+GG
Sbjct: 17 IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76
Query: 366 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFG 545
VKAPRIKTKNLIS+IFCE VAIY LI AIV S K ++ + + ++ G+ +F
Sbjct: 77 VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSA---KINDINPAGFYTKSHYYTGFALFW 133
Query: 546 AGLAVGLVNLFCGIAVGI 599
G+ VGL NL CG+ VGI
Sbjct: 134 GGITVGLCNLICGVCVGI 151
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 67.3 bits (157), Expect = 2e-12
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = +3
Query: 270 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 449
+G +G ++ + GAA G GV I GV P + KN I V+ +AIYGL+ +
Sbjct: 13 FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72
Query: 450 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCGIAVGI 599
+++SG L++ + +G++ GAGL+VGL L G A+GI
Sbjct: 73 VLISGNLKQILSLY-----------SGFIQLGAGLSVGLAGLAAGFAIGI 111
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 279 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 458
LG SV L+ + A I G + V G + PR+ ++ +IF E + +YGLI A++L
Sbjct: 92 LGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151
Query: 459 S 461
+
Sbjct: 152 N 152
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/110 (30%), Positives = 55/110 (50%)
Frame = +3
Query: 270 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 449
+G G+ S+ S +GA G G I G P I K+LI V+ + +YGL+ +
Sbjct: 13 FGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMS 72
Query: 450 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCGIAVGI 599
++++G + P S+ +G++ AGLAVGL + G A+G+
Sbjct: 73 VLIAGDMS----PDNDYSL-----FSGFIHLSAGLAVGLTGVAAGYAIGV 113
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.39
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 138 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 266
Y L L L+G+ F ++YY L + + +L FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 195 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 374
L + LN K ++ + S + WG S+AL++VGA GI G VG ++
Sbjct: 785 LTFGLNSKDRKLDAKRLTKIVSGFHWGICQNVDSIALNIVGA--GIIRFGTQNVGCLLRI 842
Query: 375 PRIKTKNLI 401
+NLI
Sbjct: 843 EPNYEQNLI 851
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 458 EHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 285
E D++ +N A +G +L+ DS +++ +S VD+H S N KG+
Sbjct: 22 EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +3
Query: 105 TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 212
+ ++N+N+ +R ++S++ + +A SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 423 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAG 530
++I + A +LS L Y+EPF +S KQ + G
Sbjct: 74 LSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYG 109
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 404 GDQILSLDSRCFDTSSHYADTSSVDAH 324
GD+ LS S H+AD +S D H
Sbjct: 652 GDEYLSAVSEFIQRCFHFADEASPDGH 678
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 544 PNITYPAIQFCCLTDTL 494
PN + FCC TDTL
Sbjct: 56 PNARFSYSPFCCFTDTL 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,675
Number of Sequences: 5004
Number of extensions: 56824
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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