Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p14r
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    30   0.34 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.80 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   1.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   4.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.8  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   9.8  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 376 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 519
           S  TT+ S   +    S ST   PQTFP+SG +   ++    +   GW
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -2

Query: 565 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPW 386
           CT    + +  S+ +S P+T ++P     + + P P  S     S+ +  S+   +T   
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST----SSTDTNSSPLPTTSTS 284

Query: 385 CPPTVSLRPPARKARLPST 329
           C  + S+ PP   +  P T
Sbjct: 285 CTTSTSI-PPTGNSTTPVT 302


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 563 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 459
           HP+ T G VS N +  P   +  V      +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 550 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 380
           P  ++AST +S+  +S  PW       A + P P    A  +S   L  N  +S  PW  
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465

Query: 379 PT 374
           PT
Sbjct: 466 PT 467


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -1

Query: 599 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 471
           P L + TS +RL PSDT   + +    N ++    + +P+  S S D
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 337 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 510
           EV+PSS++   RP   +   S ++   P   ++S  PQ +  +  S L+  AT  + S
Sbjct: 82  EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 361 ASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
           +S  P   +  TS  +  +   P+TSP P T      SS+   +T
Sbjct: 94  SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNST 138


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 204 GGGLDPFDVFRDRHEGSS 257
           G G+DPFD+ R    G S
Sbjct: 423 GAGMDPFDILRAYQAGGS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,942
Number of Sequences: 5004
Number of extensions: 40162
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)