Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p14r
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-12|CAB00066.1|  368|Caenorhabditis elegans Hypothetical p...    30   1.7  
AL033508-5|CAA22057.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   2.2  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024876-6|AAS80337.1|  181|Caenorhabditis elegans Hypothetical ...    29   3.9  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   5.2  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   5.2  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    28   6.8  
AL110484-7|CAB54398.1|  286|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    28   6.8  
U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z75714-12|CAB00066.1|  368|Caenorhabditis elegans Hypothetical
           protein Y106G6G.1 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 536 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 432
           ++N +V  P + I PVA  +S  LPE+G V G  E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336


>AL033508-5|CAA22057.1|  368|Caenorhabditis elegans Hypothetical
           protein Y106G6G.1 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 536 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 432
           ++N +V  P + I PVA  +S  LPE+G V G  E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +1

Query: 325  TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-----PKPQTFPDSGRSSLADK 489
            +S   V   + +A+   +A T  TSKQ S S  +PSTS       P T   S  S  A  
Sbjct: 2838 SSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQAAAA 2897

Query: 490  ATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 585
            A     S    + L+LT  M +    ++ ++S
Sbjct: 2898 AASSANSGEDINPLLLTALMQNPAILQSMMLS 2929


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 373 PSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLT 540
           P+A +  TS Q   S  S ++SP P   P + R + A ++T   ++V  T+ L LT
Sbjct: 266 PTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTAS-QNVETTTKLGLT 320


>AC024876-6|AAS80337.1|  181|Caenorhabditis elegans Hypothetical
           protein Y94H6A.10 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 418 PGSPSTSPKP-QTFPDSGRSSLADKATGEMKSVGW 519
           P S S S  P +  PDS RS++  K T +M+  GW
Sbjct: 28  PESSSKSKSPLKDGPDSQRSNIRRKLTTQMQKQGW 62


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 492 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 593
           HG D+ +G  I ++A+ +NG  G+ +D   +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 492 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 593
           HG D+ +G  I ++A+ +NG  G+ +D   +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713


>AL110484-7|CAB54398.1|  286|Caenorhabditis elegans Hypothetical
           protein Y38E10A.7 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -1

Query: 311 VSDDVQVAVLLAGADENSAGTFVPVAEYIE---WIETTAGIT 195
           +S   +  V+L     NSAGTF P A Y     W E T   T
Sbjct: 59  LSPTTRTPVILVHGTTNSAGTFAPQAAYFRANGWSEETVYAT 100


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373  PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
            P+A  TDT +     C  G    SP PQTFP      L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713


>U58764-3|AAB00725.1|  122|Caenorhabditis elegans Hypothetical
           protein M03E7.2 protein.
          Length = 122

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 252 SSAVLVSTGQEHSYLNIIADKSSSNIVLGSLAFLAGGLKETVGG 383
           SS + +S+    SY + + D   S++ LGS+    GG+    GG
Sbjct: 12  SSLIAISSALPASYSSSLNDPLLSSLGLGSMGMGMGGMNGMYGG 55


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 385  TTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADK 489
            T +TS+     P  P T  KP++   S +SS + K
Sbjct: 1212 TAETSEDSEVKPYQPQTPKKPESRKSSAKSSASSK 1246


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = -2

Query: 556 RIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPP 377
           R+  + + S GM++P+T++LP      +       SA+L    ++ E + ++S+ P   P
Sbjct: 561 RLAAILAKSRGMASPMTNTLPPTADDIKDSTPAVTSASLPLLPSSPEPS-SSSSSPAQQP 619

Query: 376 TVSLRPPARKA 344
           + S    A KA
Sbjct: 620 SASTEETAEKA 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,875
Number of Sequences: 27780
Number of extensions: 251770
Number of successful extensions: 1025
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)