Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p14f
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.65 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    29   0.65 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   1.5  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   1.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.5  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    27   2.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.6  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   6.1  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   6.1  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   6.1  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   8.0  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   8.0  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   8.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +2

Query: 320 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPW 499
           CT    + +  S+ +S P+T ++P     + + P P  S     S+ +  S+   +T   
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST----SSTDTNSSPLPTTSTS 284

Query: 500 CPPTVSLRPPARKARLPST 556
           C  + S+ PP   +  P T
Sbjct: 285 CTTSTSI-PPTGNSTTPVT 302


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 509 SAGTTDTSKQLSCSPGSPSISPK--PQTFPDSGRSSLADKATGEMKSVGW 366
           S  T+ T+   + + G PS S    PQTFP+SG +   ++    +   GW
Sbjct: 455 SQSTSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 322 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 426
           HP+ T G VS N +  P   +  V      +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 533 SLVASRRPSAGTTDTSKQLSCSPGSPSISPKPQTFPDSGRSSLA 402
           SL  S   S+   ++ + LS +   PS++  P+ FP   R S+A
Sbjct: 219 SLPLSSSQSSSLANSYESLSTTLDKPSLTLDPEAFPTHKRGSIA 262


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 335 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 505
           P  ++AST +S+  +S  PW       A + P P    A  +S   L  N  +S  PW  
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465

Query: 506 PT 511
           PT
Sbjct: 466 PT 467


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 219 AEDPARVNEGTGAGVEQTTGRNSDA*MDLVGLVSEGNQGVGT 94
           +ED    N+      E  T   SD  +D  G  +EG  G GT
Sbjct: 69  SEDSDAANQSPSGAPESQTEEESDRKIDGTGSSAEGGDGSGT 110


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 286 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 414
           P L + TS +RL PSDT   + +    N ++    + +P+  S S D
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 64  LVQGRSTGVQSTNALVALGDKPYQVHLRIAVSTSG 168
           L  G +T V  T       DKP  V  +IAV TSG
Sbjct: 169 LESGLATPVVETLKKATTSDKPAGVKKKIAVMTSG 203


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 37  SFVLLCGLALVQGRSTGVQSTNALVALGDKPYQV 138
           +++ +CG  +   R TG+ + N +V+ G + Y V
Sbjct: 818 NYLTICGAVIGWTRGTGLMAPNNIVSQGIEKYGV 851


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 IAVSTSGLLNTCAGSLIHSRWVLSAASCLQDVRFIW 255
           +A+S+  +L T A      +W +    C+Q + F+W
Sbjct: 441 LALSSDDVLITGADDKTVRQWDIVTGRCIQTLDFVW 476


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 80  APVCKVPTPWLPSETSPTRSIYASLFRPVVCSTP 181
           +P+   P   +PS  SPT +I+++    +   TP
Sbjct: 688 SPIRASPVKTIPSSPSPTTNIFSAPLNNITNCTP 721


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 249 ETDILEAASGAEDPARVNEGTGAGVEQTTGRNSDA*MDLVG 127
           E ++ ++A+G  DP  ++  T   V QTT    DA  ++ G
Sbjct: 241 EFEVTDSAAGTVDPTILDNATAGQVGQTTW-EGDAEWNITG 280


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 548 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSISPKPQTFPDSGRSSLADKATGEMKS 375
           EV+PSS++   RP   +   S ++   P   + S  PQ +  +  S L+  AT  + S
Sbjct: 82  EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,649
Number of Sequences: 5004
Number of extensions: 55161
Number of successful extensions: 214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)