Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13p14f
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical p... 30 1.0
AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.0
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 30 1.4
Z68343-1|CAD89741.1| 231|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 29 2.4
U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc... 29 3.2
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 3.2
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 4.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 4.2
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 28 4.2
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 28 4.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 4.2
U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbona... 28 5.5
AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion transpo... 28 5.5
AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical ... 28 5.5
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 5.5
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 27 7.3
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 7.3
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 27 7.3
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 9.6
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 9.6
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 27 9.6
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 27 9.6
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 27 9.6
>Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 349 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEI 453
++N +V P + I PVA +S LPE+G V G EI
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 349 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEI 453
++N +V P + I PVA +S LPE+G V G EI
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 105 PGCPRRQ-ALPGPSTHRCFDQWSAQHLRRFPHSLSLGPQRR*LPPRCPFHLGPLW 266
PG P R A GP T+ C D W H + G +R L C + PLW
Sbjct: 1138 PGHPHRFIATQGPLTNTCEDFWMMLMQYDVEHIVMFGQKRENLTDMCTDYF-PLW 1191
>Z68343-1|CAD89741.1| 231|Caenorhabditis elegans Hypothetical
protein F59B8.1a protein.
Length = 231
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = -3
Query: 359 LLMLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKRTSWRQLAALRTQRE*MREPAQ 180
L+ +T+ S+G + A +RD LITT ++ RT WR L R + +++ +
Sbjct: 5 LMSMTKEGASDGPQFVAPAKTSRDTLITTA----YRLHRTRWRILEPYRRLKNALKKLQE 60
Query: 179 VLSRPLVETAMRRWTW*GLSPRATRAL 99
+ A+ R+ G S R L
Sbjct: 61 DYLKSKEANALMRYVKLGQSVREVAML 87
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = -3
Query: 575 TRAVPTSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSIS-----PKPQTFPDSGRS 411
T A +S V + +A+ +A T TSKQ S S +PS S P T S S
Sbjct: 2833 TAASSSSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSS 2892
Query: 410 SLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 300
A A S + L+LT M + ++ ++S
Sbjct: 2893 QAAAAAASSANSGEDINPLLLTALMQNPAILQSMMLS 2929
>U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc
finger proteinC.e-MyT1 protein.
Length = 539
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 485 KQLSCSPGSPSISPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSE 327
+++ C P PS+ P+ Q+ P R A A G + TS ++L P SE
Sbjct: 446 EEVKCEPPVPSVIPEIQSTP--SRPVAAPVAPGSAEKSSPTSQMLLQMPGFSE 496
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 127 PYQVHLRIAVSTSGLLNTCAGSLIHSRWVLSAASCLQ 237
P+ V +R+ C G+LI + VL+AA C Q
Sbjct: 44 PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 512 PSAGTTDTSKQL--SCSPGSPSISPKPQTFPDSGRSSLADKAT 390
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 512 PSAGTTDTSKQL--SCSPGSPSISPKPQTFPDSGRSSLADKAT 390
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 512 PSAGTTDTSKQL--SCSPGSPSISPKPQTFPDSGRSSLADKAT 390
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 512 PSAGTTDTSKQL--SCSPGSPSISPKPQTFPDSGRSSLADKAT 390
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 393 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 292
HG D+ +G I ++A+ +NG G+ +D +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 393 HGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQ 292
HG D+ +G I ++A+ +NG G+ +D +R Q
Sbjct: 596 HGMDKYTGYQIRIEAEGSNG-SGLSSDTVKVRTQ 628
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 512 PSAGTTDTSKQL--SCSPGSPSISPKPQTFPDSGRSSLADKAT 390
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform a protein.
Length = 959
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 79 STGVQSTNALVALG-DKPYQVHLRIAVSTSGLLNTCAGSLIHS 204
++G ++ A VA G + P + H R STS + +C + IHS
Sbjct: 113 ASGSANSEATVASGANTPRRCHFRRPKSTSEMHQSCTSATIHS 155
>AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion
transporter ABTS-3 protein.
Length = 959
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 79 STGVQSTNALVALG-DKPYQVHLRIAVSTSGLLNTCAGSLIHS 204
++G ++ A VA G + P + H R STS + +C + IHS
Sbjct: 113 ASGSANSEATVASGANTPRRCHFRRPKSTSEMHQSCTSATIHS 155
>AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical
protein Y94H6A.10 protein.
Length = 181
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 467 PGSPSISPKP-QTFPDSGRSSLADKATGEMKSVGW 366
P S S S P + PDS RS++ K T +M+ GW
Sbjct: 28 PESSSKSKSPLKDGPDSQRSNIRRKLTTQMQKQGW 62
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -3
Query: 512 PSAGTTDTSKQLSCSPGSPSISPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLT 345
P+A + TS Q S S + SP P P + R + A ++T ++V T+ L LT
Sbjct: 266 PTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTAS-QNVETTTKLGLT 320
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 83 PVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLAA 232
P ++PTP P+ + +++ +P CS P P T + S AA
Sbjct: 57 PPSRLPTPTTPATGRASLPERSAMAKPASCSRPIPTMQSTASRISTLTAA 106
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +2
Query: 329 RIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPP 508
R+ + + S GM++P+T++LP + SA+L ++ E + ++S+ P P
Sbjct: 561 RLAAILAKSRGMASPMTNTLPPTADDIKDSTPAVTSASLPLLPSSPEPS-SSSSSPAQQP 619
Query: 509 TVSLRPPARKA 541
+ S A KA
Sbjct: 620 SASTEETAEKA 630
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 83 PVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLAA 232
P ++PTP P+ + +++ +P CS P P T + S AA
Sbjct: 57 PPSRLPTPTTPATGRASLPERSAMAKPASCSRPIPTMQSTASRISTLTAA 106
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 50 CAVLLWYRGAAPVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLA 229
C W G V + PS++S + + P V TPAPVP T A + P++
Sbjct: 370 CTAGEWLNGTNAVPQ-KVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMS 428
>Z81592-8|CAB04730.1| 365|Caenorhabditis elegans Hypothetical
protein T16G1.8 protein.
Length = 365
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 83 PVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPS-FTLAGSSAPL 226
P+C T + S Y+ + S PAPVPS F +G S P+
Sbjct: 39 PICAPQTICAQQAPCSSSSSYSPSYSASYASVPAPVPSPFYQSGWSNPI 87
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 101 TPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLAA 232
TP P+ PT YA+ RP T P P+ T+A +A +A
Sbjct: 461 TPITPATVRPT---YATTTRPYWTRTTRPTPTTTVAPDTASWSA 501
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 3976 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 4029
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 4505 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 4558
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 4186 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 4239
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 3976 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 4029
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 4505 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 4558
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 4186 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 4239
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +3
Query: 12 TLSQDEGSIFCTIVRSCSGTGAQHRCAKYQRPGCPRRQALPGPSTHRCFDQWSA 173
T D G + V A + +PG P P S H C W A
Sbjct: 3395 TRRSDSGPVKIKAVNPYGEAEANIKITVIDKPGAPENITYPAVSRHTCTLNWDA 3448
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 101 TPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLAA 232
TP P+ PT YA+ RP T P P+ T+A +A +A
Sbjct: 461 TPITPATVRPT---YATTTRPYWTRTTRPTPTTTVAPDTASWSA 501
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 50 CAVLLWYRGAAPVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLA 229
C W G V + PS++S + + P V TPAPVP T A + P++
Sbjct: 370 CTAGEWLNGTNAVPQ-KVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMS 428
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 50 CAVLLWYRGAAPVCKVPTPWLPSETSPTRSIYASLFRPVVCSTPAPVPSFTLAGSSAPLA 229
C W G V + PS++S + + P V TPAPVP T A + P++
Sbjct: 370 CTAGEWLNGTNAVPQ-KVSMAPSQSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMS 428
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,414
Number of Sequences: 27780
Number of extensions: 352398
Number of successful extensions: 1364
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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