Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p13r
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    27   2.6  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   5.9  

>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 552 RWSMWESNLTKNSCRSQPAHYP 617
           +WS+WE NLT  + RS+  H P
Sbjct: 141 KWSLWEGNLT--NPRSEQPHTP 160


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 456 ELREIWSTSITFDVLTFLFFHRRKLPASHPYGRWSMWESNLTKNSCRSQPAHYPG 620
           EL+ + S    F  + ++F HRR    + PY  W+ +E  +T+    +   ++ G
Sbjct: 93  ELKYVLSKMKVFPKVYWIFNHRRWCLENAPYPNWN-YEMMITEKLLSADARNFHG 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,354
Number of Sequences: 5004
Number of extensions: 60738
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)