Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p13r
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL133561-1|CAB63715.1|  580|Homo sapiens hypothetical protein pr...    31   3.9  
AL117481-1|CAB55954.1|  319|Homo sapiens hypothetical protein pr...    31   3.9  
AF193043-1|AAG22471.2|  179|Homo sapiens unknown protein.              31   5.2  
BC093994-1|AAH93994.1|  179|Homo sapiens hypothetical protein LO...    30   9.1  

>AL133561-1|CAB63715.1|  580|Homo sapiens hypothetical protein
           protein.
          Length = 580

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 532 RLPTRTAGGVCGSRTSL-KTPAAHSRRTTPDRAGLLRRRDRVYAEHITSIPP 684
           R P R +     SR SL +TP+  S  TTP RA L++    V    IT  PP
Sbjct: 282 RTPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTV---SITRTPP 330


>AL117481-1|CAB55954.1|  319|Homo sapiens hypothetical protein
           protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 532 RLPTRTAGGVCGSRTSL-KTPAAHSRRTTPDRAGLLRRRDRVYAEHITSIPP 684
           R P R +     SR SL +TP+  S  TTP RA L++    V    IT  PP
Sbjct: 21  RTPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTV---SITRTPP 69


>AF193043-1|AAG22471.2|  179|Homo sapiens unknown protein.
          Length = 179

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 490 LMS*RFFFSTGENCRLPTRTAGGVCGSRTSLKTPAAHSRRTTPDRAG 630
           L+S  +  S+G++CR+  R      G  +  K+P   ++R TP R G
Sbjct: 90  LLSNLWTLSSGQSCRIRHRMYSSALGRGSLKKSPGLKTKRDTPVRYG 136


>BC093994-1|AAH93994.1|  179|Homo sapiens hypothetical protein
           LOC80161 protein.
          Length = 179

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 490 LMS*RFFFSTGENCRLPTRTAGGVCGSRTSLKTPAAHSRRTTPDRAG 630
           L+S  +  S+G++CR+  RT     G  +  K+P   ++R T  R G
Sbjct: 90  LLSNLWTLSSGQSCRIRHRTYSSALGRGSLKKSPGLKTKRDTSVRYG 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,733,782
Number of Sequences: 237096
Number of extensions: 2148032
Number of successful extensions: 5365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5364
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)