Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p13r
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    29   0.056
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    29   0.056
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.52 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.52 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.52 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.52 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 543 PYGRWSMWESNLTKNSCRSQPAHYPGPGGAIETAGPGLRRAYYIH 677
           PY  + +W      N  R  P ++ G  G    +    R+AYY+H
Sbjct: 141 PYNNYYIWHPGKIVNGKRVPPTNWVGVFGGSAWSWREERQAYYLH 185


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 543 PYGRWSMWESNLTKNSCRSQPAHYPGPGGAIETAGPGLRRAYYIH 677
           PY  + +W      N  R  P ++ G  G    +    R+AYY+H
Sbjct: 141 PYNNYYIWHPGKIVNGKRVPPTNWVGVFGGSAWSWREERQAYYLH 185


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 233 SNNS*QFNYINSKM*LNCKAKTYNL 159
           +NN+ ++NY N+    NCK   YN+
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 233 SNNS*QFNYINSKM*LNCKAKTYNL 159
           +NN+ ++NY N+    NCK   YN+
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 233 SNNS*QFNYINSKM*LNCKAKTYNL 159
           +NN+ ++NY N+    NCK   YN+
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 233 SNNS*QFNYINSKM*LNCKAKTYNL 159
           +NN+ ++NY N+    NCK   YN+
Sbjct: 92  NNNNYKYNYNNNNYNNNCKKLYYNI 116


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 413 INTIVRHHRDE*GNRAKRNMEYINNV*CLNVS 508
           +N I+   RD+ G  AK+++   NN+  + VS
Sbjct: 202 VNRILNDARDKTGGSAKKSLTEYNNLKAMVVS 233


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 233 SNNS*QFNYINSKM*LNCKAKTYNLIN 153
           +NN+   N  N+    NCK   YN+IN
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -2

Query: 378 LVLVKKR*TFFYFSSV*PCIM 316
           +V++++R  +++F+ + PC++
Sbjct: 224 VVIIRRRTLYYFFNLIVPCVL 244


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +3

Query: 393 YVGETTLLTPSSDIIGTNRVIELREIWSTSITFDVLTFLFFHRRKLPASHPYGRWSMWES 572
           Y+ E  +  P+   I  ++V      W   +  ++  FL     + P  +PY  W M + 
Sbjct: 46  YIEENNM--PNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWEMNDI 103

Query: 573 N 575
           N
Sbjct: 104 N 104


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 184 IVKLKLITS*ILRHIRYSFTINVNKFFL 101
           ++KLK++ S ILR+ R    +  ++F L
Sbjct: 495 MLKLKIVLSTILRNFRVRSDVKESEFRL 522


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 516 GKKET-LRHQTLLMYSIFLLARLPYSSL 436
           G++E  +     LM + FLLA  PY++L
Sbjct: 103 GRREAKITKMVALMITAFLLAWSPYAAL 130


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 152 SATYKIFVHNKCKQVFFVIFTRLKTKGN 69
           SA +K+F H K   +FF   T L  K N
Sbjct: 109 SALFKLFYHAKDFDIFFK--TALWAKNN 134


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 152 SATYKIFVHNKCKQVFFVIFTRLKTKGN 69
           SA +K+F H K   +FF   T L  K N
Sbjct: 109 SALFKLFYHAKDFDIFFK--TALWAKNN 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,008
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)