Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p13f
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0522 - 29744368-29745534                                         30   1.2  
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892...    29   3.8  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    29   3.8  
07_03_0222 + 15352972-15353589,15355476-15355616,15355741-15355854     27   8.7  
07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552     27   8.7  

>02_05_0522 - 29744368-29745534
          Length = 388

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 156 RALVFLGSAGILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSL 311
           R  +F+   G++ A L L   S  FG+W + +  +G+ L+ + +   L   L
Sbjct: 230 RVQIFISDVGVVSAGLALFKLSSAFGFWWV-VRVYGVPLLIVNAWLVLITYL 280


>03_05_1014 -
           29687343-29687410,29688054-29688191,29689246-29689294,
           29689623-29689728,29690184-29690332,29690840-29690921,
           29691308-29691360,29691644-29691729,29691855-29691909,
           29692179-29692579,29693564-29693660,29694191-29694322,
           29694426-29694476,29694659-29694751,29694917-29694992,
           29695711-29695856,29696009-29696043,29696056-29696107,
           29696290-29696401,29696617-29696813,29697456-29697560,
           29697667-29697819,29698317-29698424,29698608-29698752,
           29699374-29699432,29701397-29701441,29701677-29701730,
           29701901-29702113,29702873-29702958,29704492-29704572,
           29704670-29704729,29705599-29705644,29706212-29706286,
           29706376-29706512,29708306-29708366,29708726-29708743,
           29709710-29709743,29709811-29709902,29709997-29710029
          Length = 1260

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 150 CVRALVFLGSAGILMASLILTSQSMTFGYWTIYLTHWGIILITITSGAALAVSLVSLKTG 329
           C +      +  + M+ LILT Q+    +W + L  +  +L+ I   AA+   L++   G
Sbjct: 55  CPKKKNITNTPSVYMSVLILTDQARGTPFWKLVLKQFDDLLVKILIAAAVISFLLARMNG 114

Query: 330 CIG 338
             G
Sbjct: 115 ETG 117


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -3

Query: 325 VFNDTKETARAAPDVIVIRIIPQ*VKYIVQYPKVILWLVNINDAIKIPADPRNTKALTHN 146
           V+ D K + R+  +  +    P    Y V  P +  WL   N  I   AD   T ALT  
Sbjct: 620 VYRDRKASLRSIAEAALAGNNPDGPLYFVSRPWLTQWLRRKNVDIPSDADSGPTIALTCT 679

Query: 145 NGTL 134
           +G L
Sbjct: 680 HGNL 683


>07_03_0222 + 15352972-15353589,15355476-15355616,15355741-15355854
          Length = 290

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 140 AIVVC*GLGVPGISWYFNGVINI 208
           A   C G+GV GI+W F G+I I
Sbjct: 76  ADAACGGVGVLGIAWAFGGMIFI 98


>07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552
          Length = 306

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 140 AIVVC*GLGVPGISWYFNGVINI 208
           A   C G+GV GI+W F G+I I
Sbjct: 73  ADAACGGVGVLGIAWAFGGMIFI 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,932
Number of Sequences: 37544
Number of extensions: 248346
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)