Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13p13f
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p... 30 1.1
Z73974-4|CAA98269.1| 481|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY147932-1|AAN39842.1| 481|Caenorhabditis elegans UDP-glucose d... 29 2.6
Z95621-1|CAB09130.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical p... 29 3.4
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 29 3.4
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 29 3.4
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 29 3.4
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 29 3.4
U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
protein F27C1.11 protein.
Length = 1037
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 250 KYIVQYPKVILWLVNINDAIKIPADPRNTKALTHNNGTLERL 125
K+ PK++++ VN I+I A PRN + + N T E+L
Sbjct: 101 KHFTLVPKLLIFNVNYFYRIQIIACPRNERPYLNENSTKEKL 142
>Z73974-4|CAA98269.1| 481|Caenorhabditis elegans Hypothetical
protein F29F11.1 protein.
Length = 481
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 143 IVVC*GLGVPGISWYFNGVININ---KPKYDFRVLDNIFNSL 259
+ +C L +P ++ Y+ GVININ + ++ +++ +FN++
Sbjct: 292 VYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTV 333
>AY147932-1|AAN39842.1| 481|Caenorhabditis elegans UDP-glucose
dehydrogenase protein.
Length = 481
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 143 IVVC*GLGVPGISWYFNGVININ---KPKYDFRVLDNIFNSL 259
+ +C L +P ++ Y+ GVININ + ++ +++ +FN++
Sbjct: 292 VYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTV 333
>Z95621-1|CAB09130.1| 357|Caenorhabditis elegans Hypothetical
protein VC27A7L.1 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 147 LCVRALVFLGSAGILMASLILTSQSMTFGYWTIYLTHWGIILITI 281
LCVR + FL S G+L I ++ W Y T+ I+I I
Sbjct: 142 LCVRCMFFLLSYGVLEVHFIYRYVAICRPQWISYFTNPKCIIILI 186
>Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical
protein T26E4.3 protein.
Length = 378
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 42 YFKSEFQLSNFNLNHDA--ASDFYLSCYQSSRSSVPLLCVRAL---VFLGSAGILMASLI 206
Y KS ++S L D ++ + +S+ SS ++ V L + L + I +
Sbjct: 258 YEKSHSRISVVVLGDDLNFVNEVFTQSIKSNTSSYTVITVPILKPEIDLAISRIFCDVFL 317
Query: 207 LTSQSMTFGYWTIYL 251
LT+ + TFG+W YL
Sbjct: 318 LTAPTSTFGWWLAYL 332
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 30 RVKKYFKSEFQLSNFNLNHDAASDFYLSCYQSSRSSVPLLCVRALVFLGSAGILMASLIL 209
R K YF S+++ FN++ FY+ C + VP L A++ G++G+L L
Sbjct: 427 RAKHYF-SDYR-DGFNISIFTVV-FYMFCV----TVVPTLTFGAIMGAGTSGLLAVKECL 479
Query: 210 TSQSMTFGYWTI 245
SQ+++ W++
Sbjct: 480 VSQALSGLIWSV 491
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 30 RVKKYFKSEFQLSNFNLNHDAASDFYLSCYQSSRSSVPLLCVRALVFLGSAGILMASLIL 209
R K YF S+++ FN++ FY+ C + VP L A++ G++G+L L
Sbjct: 427 RAKHYF-SDYR-DGFNISIFTVV-FYMFCV----TVVPTLTFGAIMGAGTSGLLAVKECL 479
Query: 210 TSQSMTFGYWTI 245
SQ+++ W++
Sbjct: 480 VSQALSGLIWSV 491
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 30 RVKKYFKSEFQLSNFNLNHDAASDFYLSCYQSSRSSVPLLCVRALVFLGSAGILMASLIL 209
R K YF S+++ FN++ FY+ C + VP L A++ G++G+L L
Sbjct: 427 RAKHYF-SDYR-DGFNISIFTVV-FYMFCV----TVVPTLTFGAIMGAGTSGLLAVKECL 479
Query: 210 TSQSMTFGYWTI 245
SQ+++ W++
Sbjct: 480 VSQALSGLIWSV 491
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 30 RVKKYFKSEFQLSNFNLNHDAASDFYLSCYQSSRSSVPLLCVRALVFLGSAGILMASLIL 209
R K YF S+++ FN++ FY+ C + VP L A++ G++G+L L
Sbjct: 427 RAKHYF-SDYR-DGFNISIFTVV-FYMFCV----TVVPTLTFGAIMGAGTSGLLAVKECL 479
Query: 210 TSQSMTFGYWTI 245
SQ+++ W++
Sbjct: 480 VSQALSGLIWSV 491
>U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical
protein R03H4.6 protein.
Length = 646
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Frame = +3
Query: 132 SSVPLLCVRALVFLGSAGILMA----SLILTSQSMTF-G--YWTIYLTHWGIILITITS 287
+ + LL +R LV + +A I+ + + L S+++ + G + IYL HW II++ +T+
Sbjct: 252 NKIELLALRPLVTMATAFIIASDSQDNQFLKSKTLCYIGDISYVIYLVHWPIIVLFLTA 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,141
Number of Sequences: 27780
Number of extensions: 238179
Number of successful extensions: 581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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