Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p06r
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   3.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   5.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   6.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   6.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.1  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   9.1  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 720 SIIHNEWILTAAHCVARRESFVIRLGL--TNLTRPELIMETVEKYVHPDYNVGST 562
           +++ +++++    C +  +S VIRLG+   NLT    + +   KY+  D  + +T
Sbjct: 78  NLLKDKFLILQVLCDSHTDSGVIRLGILKINLTEYVYVGQDTRKYLLADSKINAT 132


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 258 PNPSGFVRPEFYHDW--LKQVTGINFDW 181
           P+   F+ PEF H+W  L +  G+  +W
Sbjct: 254 PSHPDFISPEFCHEWTELAERNGLQEEW 281


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 403 DIVREIL*SYFTKHLYRRQWRTPDYG*SRWLTHYRRHH*LWLRAGMQHTQSVRFRPTRVL 224
           D++++    +++K         PD+  + WL  +RR H +   A  Q  +S++F   R  
Sbjct: 102 DMIKQAATRFWSKIPAYASLPLPDFS-NGWLDKFRRRHYIQQSAVNQALESIKFEVFREY 160

Query: 223 P 221
           P
Sbjct: 161 P 161


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 606 TVEKYVHPDYNVGSTAVQVDEIALLKLPRRVEYGRGYVPEVLSWVYQ 466
           T+ +YVH      + A+Q     LL    RV+YG+ Y  + +  +++
Sbjct: 693 TLFEYVHEFLRHVNPAIQKKGYKLLGTLLRVDYGKAYATQHVKEIFE 739


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +3

Query: 588 ARTSPL--SPLLTQDGS-GWSIPNGSRMIRVWPRNELLLES 701
           ART PL  SPLL +  S G +IP  SR   +  RN+L L+S
Sbjct: 51  ART-PLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFLDS 90


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 657 VIRLGLTNLTRPELIMETVEKYVH-PDYNVGSTAV 556
           + +LG+   TR E IM+T+  ++H  D NV S  +
Sbjct: 841 LFKLGIKLCTRNEQIMKTIWSFIHVHDCNVISEVI 875


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 465 LGITNEECLNWYPNSQTIKDQTLCAKYYNHTSQNICTGD 349
           L IT  E ++     Q +K+Q L  +   +TS++IC  +
Sbjct: 94  LNITENEIMSLESQLQKMKEQLLQLEERENTSEDICQSE 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,525
Number of Sequences: 5004
Number of extensions: 73376
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)