Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13p06r
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 34 0.11
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325... 33 0.33
01_06_0456 + 29521282-29522064 32 0.58
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 31 1.3
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 29 4.1
10_01_0193 - 2127691-2127834,2128175-2128244,2128463-2128561,212... 29 5.4
05_01_0172 + 1194563-1194934,1196051-1196120,1196769-1196833,119... 29 5.4
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 7.2
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 7.2
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 28 7.2
12_01_0043 + 344084-344452,346672-347546,347635-348145 28 9.5
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34... 28 9.5
05_03_0157 - 9027777-9027862,9028142-9029357 28 9.5
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 28 9.5
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 9.5
02_04_0646 + 24710348-24711838 28 9.5
02_02_0630 - 12395305-12395598,12396790-12396882 28 9.5
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 9.5
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 474 PNSRPRGHSRVHTPHDGAASGERSHQPARRWSRHCSQGARTSP 602
P+ PR H PH R + RRW CS+ AR P
Sbjct: 156 PSMAPRRHREPEPPHPVLPPAGRRSEAGRRWRWRCSETARAPP 198
>01_06_1506 +
37830468-37830600,37830703-37830920,37832078-37832529,
37832595-37833402,37834986-37835073,37835196-37835299,
37835402-37835483,37836670-37836923
Length = 712
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 390 KYYNHTSQNICTGDSGGPLTMDDLDGSPTIVGITNFGYARG 268
K+ H + TG + P M+D+ GSP + NFG + G
Sbjct: 582 KHVTHIGWDSPTGSAASPSWMNDMKGSPDYSSLNNFGPSTG 622
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 501 RVHTPHDGAASGERSHQ--PARRWSRHCSQGARTSPLSPLLTQDGSG 635
R ++P GA G R + PA SR CS+ R L P +T +G
Sbjct: 14 RCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAAAG 60
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 498 SRVHTPHDGAASGERSHQPARRWSRHCSQGARTSPLSPLLTQDGSGWSIPNGS 656
S++H H+GA ER+ A+ R + G R S + L G+G + N S
Sbjct: 192 SKIHMRHEGAIKRERARTYAQSHQRCSNHGGRPSSPAVSLKHHGNGATRSNHS 244
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 462 PIDRPNSRPRGHSRVHTPHDGAASGERSHQPARRWS-RHCSQGARTSPLSPLLTQDGSGW 638
P P G V+ G A G + Q ++ S RHC G L L ++ S W
Sbjct: 518 PSKPPMPAKSGRLTVNPSKRGGAGGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAW 577
Query: 639 SIPNGSRMIR 668
S+ +++R
Sbjct: 578 SMKRLMKIVR 587
>10_01_0193 -
2127691-2127834,2128175-2128244,2128463-2128561,
2128676-2128811,2128889-2128973
Length = 177
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 501 RVHTPHDGAASGERSHQPARRWSRHCSQGART 596
R T HD A G+ S + RW RH + A+T
Sbjct: 74 REMTSHDARADGDGSDWRSNRWVRHFGRVAQT 105
>05_01_0172 +
1194563-1194934,1196051-1196120,1196769-1196833,
1197608-1197958
Length = 285
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 435 WYPNSQTIKDQTLCAKYYNHTSQNICTGDSGGPLTMDDLDGS 310
W S K T CA YN+ ++ T + G P ++D+D S
Sbjct: 166 WQSKSGCCKPPTSCA--YNYVNETFWTANPGVPTVVNDVDCS 205
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 546 HQPARRWSRHCSQGARTSPLSPLLTQDGSGWSIPNGSRMIRVWPR 680
H P+ + + T P SP +T+DG S +R+I V PR
Sbjct: 155 HSPSTPEKTQAATPSATQPPSPAVTEDGRTNSPATPNRIIPVTPR 199
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 510 YGRGYVPEVLSWVYQLGITNEECLNWYPNSQTI 412
Y G +L W Y + + + C W P ++T+
Sbjct: 55 YDVGQFKNILGWSYLVTVLAQSCREWPPRNETL 87
>01_06_1127 -
34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 142 VPEALADNN----VKDAPVEVDAGDLFQPV 219
VPEA NN V +AP+E+D DL PV
Sbjct: 251 VPEAAGTNNSEEAVPEAPMEIDEYDLVDPV 280
>12_01_0043 + 344084-344452,346672-347546,347635-348145
Length = 584
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 216 WLKQVTGINFDWSVFDIVIS*SFG 145
W++ VTG NFD+S + + S G
Sbjct: 36 WIQAVTGTNFDFSAYSSALKASLG 59
>11_01_0044 +
340486-340854,341855-341911,343100-343974,344065-344398,
345553-345645,345913-346062
Length = 625
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 216 WLKQVTGINFDWSVFDIVIS*SFG 145
W++ VTG NFD+S + + S G
Sbjct: 36 WIQAVTGTNFDFSAYSSALKASLG 59
>05_03_0157 - 9027777-9027862,9028142-9029357
Length = 433
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 615 LTQDGSGWSIPNGSRMIRVWPRNELLLES 701
L DG GW++ + + R+WP ++ L ++
Sbjct: 311 LDDDGGGWTLEHRVALSRLWPHDQNLCKN 339
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -2
Query: 429 PNSQTIKDQTLCAKYYNHTSQNICTGD-----SGGPLTMDDLDGSPTIVGITNFGY 277
P Q ++ + YN +S+++ D +G PLT+ D D T+VG Y
Sbjct: 100 PTGQARVTNSISSACYNTSSRDMDYNDWQINFTGTPLTISDADNKFTVVGCQTLAY 155
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 522 GAASGERSHQPARRWSRHCSQGARTSPLSPLLTQDGSGWSIPNGS 656
G+ SG RS + R W+RH Q SP + S S+ NGS
Sbjct: 870 GSGSGSRSLRRLRAWARHYDQ---KDLKSPTFKRRWSDESVRNGS 911
>02_04_0646 + 24710348-24711838
Length = 496
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 285 FGYARGCNTPNPSGFVRPEFYHDWLKQVTGINFDWSVF 172
FG+A P+ +GF+ F+ LKQV + FD+S F
Sbjct: 87 FGFAFAFGAPS-NGFIGKHFFG--LKQVPQVGFDYSFF 121
>02_02_0630 - 12395305-12395598,12396790-12396882
Length = 128
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +3
Query: 462 PIDRPNSRPRGHSRVHTPHDGAASGERSHQPARRWSRHCSQGARTSPLSPL-LTQDGS-- 632
P+ P S V+ P GA+ R RRWS R P++ L +T D S
Sbjct: 37 PLHSPPSHEGDAVSVNPPGGGASRRGRHVWCRRRWS---GADGRADPVADLDVTMDSSDQ 93
Query: 633 GWSIPNGSRMIRV 671
GW+ P + M V
Sbjct: 94 GWAKPRQNPMAAV 106
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 483 RPRGHSRVHTPHDGAASGERSHQPARRWSRHCSQG 587
R RGHS + D + G+R H+ + RH G
Sbjct: 1121 RRRGHSSSDSESDSDSDGDRKHRKRKDRKRHRKHG 1155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,475,922
Number of Sequences: 37544
Number of extensions: 554741
Number of successful extensions: 1408
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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