Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p06r
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    43   4e-06
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            25   0.59 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
 Frame = -2

Query: 729 CGGSIIHNEWILTAAHCVARRES--FVIRLG----LTNLTRPELIMETVEK-YVHPDYN- 574
           CG +II   ++LTAAHC+    +    I +G     +       ++ ++ K  +HP Y+ 
Sbjct: 188 CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 573 VGSTAVQVDEIALLKLPRRVEYGRGYVPEVLSWVYQLGI---TNEECLNWYPN------S 421
           +     Q+++IALLK  + +++G    P  L + + L     ++   L W         S
Sbjct: 248 IEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLS 307

Query: 420 QTIKDQTL-------CAKYYNHTSQN----------ICTGDSGGPLTMDDLDGSPTI-VG 295
             ++  TL       C KYY +   N           C  DSGGP+   +      + +G
Sbjct: 308 HILQKTTLNMLTQVECYKYYGNIMVNAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIG 367

Query: 294 ITNFGYARGCNTPNPSGFVRPEFYHDWLKQVT 199
           I ++G   G     P+G  +   Y DW+   T
Sbjct: 368 IISWGAECG---KYPNGNTKVGSYIDWIVSQT 396


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 554 RLMRSLS*SCPVVWSMDAAMSPRS*VGSINW 462
           R  ++L+ +  ++W++D ++ P+   GSI W
Sbjct: 10  RRKKNLNQNQMMIWALDCSIKPKDHNGSIYW 40


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 379 SYFTKHLYRRQWRTPDYG*SRWLTHYRRHH 290
           S+  K L RR  R  +YG    L ++  HH
Sbjct: 254 SWHQKELVRRDSRRKNYGGVYHLDNHHVHH 283


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 523 PSCGVWTRLCPRGLELGLSIGY 458
           P  GVW R  P G     S  Y
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFDY 201


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 594 TSPLSPLLTQDGSGWSIPNGSRMIRVWPRNELLLESIR 707
           T  +SP     GSG S P+   M    P+++  ++++R
Sbjct: 376 TERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLR 413


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 424 VRVPVKALLVRDTQLIDPT 480
           V VP K++L +  +L+D T
Sbjct: 106 VAVPTKSILEKKPELVDAT 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,272
Number of Sequences: 438
Number of extensions: 4869
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)