Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p06f
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    48   6e-08
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            25   0.46 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.4 bits (110), Expect = 6e-08
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
 Frame = +1

Query: 130 NRIIGGWLATEGQFPYKVSVRNVSPVGGVSACGGSIIHNEWILTAAHCVARRES--FVIR 303
           +RI+GG      +FP    ++     G +  CG +II   ++LTAAHC+    +    I 
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 304 LG----LTNLTRPELIMETVEK-YVHPDYN-VGSTAVQVDEIALLKLPRRVEYGRGYVPE 465
           +G     +       ++ ++ K  +HP Y+ +     Q+++IALLK  + +++G    P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 466 VLSWVYQL 489
            L + + L
Sbjct: 277 CLPFQHFL 284


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 398 RLMRSLS*SCPVVWSMDAAMSPRS*VGSINW 490
           R  ++L+ +  ++W++D ++ P+   GSI W
Sbjct: 10  RRKKNLNQNQMMIWALDCSIKPKDHNGSIYW 40


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 21  DLFCAFWRFAGRSCGNCRCN 80
           D   AFWR   R C   R N
Sbjct: 365 DFRLAFWRLTCRKCFKSRTN 384


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 429 PSCGVWTRLCPRGLELGLSIGY 494
           P  GVW R  P G     S  Y
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFDY 201


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 358 TSPLSPLLTQDGSGWSIPNGSRMIRVWPRNELLLESIR 245
           T  +SP     GSG S P+   M    P+++  ++++R
Sbjct: 376 TERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLR 413


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -2

Query: 92  TEGIITSTVSTGTPCEPPKSTEQIKIHH 9
           T+ +   +   G PC+P    + +  HH
Sbjct: 38  TQSVQQQSQQAGDPCDPSLLRQGVPGHH 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 528 VRVPVKALLVRDTQLIDPT 472
           V VP K++L +  +L+D T
Sbjct: 106 VAVPTKSILEKKPELVDAT 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,034
Number of Sequences: 438
Number of extensions: 4926
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)