Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p03r
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...   109   3e-25
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    28   1.5  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   2.7  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.7  
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    27   3.5  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score =  109 bits (263), Expect = 3e-25
 Identities = 59/129 (45%), Positives = 78/129 (60%), Gaps = 9/129 (6%)
 Frame = -2

Query: 458 KIAGYLNLAADFTHNFTDGLAIGASFIAGQSIGYITTVTILLHEIPHEIGDFAILVQSGC 279
           K   YLNL  D  HNF DGLAI ++F    SIG  TT  +LLHEIP EIGD AIL+++G 
Sbjct: 294 KTVVYLNLLCDSFHNFMDGLAITSAFFTNTSIGISTTFAVLLHEIPAEIGDLAILLRNGY 353

Query: 278 SRKKAMLLQLLTAFGAISGTFIS--IYLRGSGEGLVSSL-------ILPFTAGGFIYIAT 126
           ++ + ++LQ++T    + G  ++  IY   S      S        +LPFTAGGF+YIA 
Sbjct: 354 TKSQVLVLQMITMVTGLLGAIVATYIYTASSSSSPYGSFLLQLEDKLLPFTAGGFLYIAY 413

Query: 125 VSVIPELLE 99
           + V PELLE
Sbjct: 414 LGVFPELLE 422


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 297 FGPIWLFKKESYAITI--AYCFWSNFRDLYFNLLK 199
           F  I+L+   +Y + +   YCF  NFR  + N+LK
Sbjct: 188 FKHIFLYVAPAYFVYLLRVYCFTPNFRPQFLNILK 222


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 155 TAGGFIYIATVSVIPELLEGSNNKFSQSIKEIIAL 51
           T+ G +  A +SV P+ +E   N+FS + KE++ +
Sbjct: 193 TSYGLVNDAWLSVYPDQVEHPPNRFSMNDKELVEI 227


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 282 LFKKESYAITIAYCFWSNFRDLYFNLLKRFRG 187
           +FKK  Y     YC ++ F+ L+ N+LK  +G
Sbjct: 497 IFKKICYLWLFLYCPFTPFQILFSNILKMEKG 528


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 449 GYLNLAADFTHNFTDGL---AIGASFIAGQSIGYITTV 345
           GY+NLA + T  + +G      G +FI G ++ Y++ +
Sbjct: 36  GYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSAL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,952
Number of Sequences: 5004
Number of extensions: 53988
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)