Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p03r
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 139 INPPAVKGNIRDETRPSPEPLK*IEIKVPEIAP 237
           ++PP     +R E +P  EP     I +P+  P
Sbjct: 23  LDPPTRPARLRREAKPEAEPGNNRPIYIPQPRP 55


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 144 IYLYCYSISNP*VIGRLEQQIFPIH*RNNCTLSWSVHD 31
           +++Y  S+S P + G       P     +C++SW VHD
Sbjct: 22  VWIYALSLSLPPLFGW--GSYGPEAGNVSCSVSWEVHD 57


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 547  PPLKSLTVFSTTKNVIIPPSTPRP 618
            PP  S    S  +   +PPS+P+P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSPQP 1292


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 139 INPPAVKGNIRDETRPSPEPLK*IEIKVPEIAP 237
           ++PP     +R E +P  EP     + +P+  P
Sbjct: 22  LDPPTRPTRLRREAKPEAEPGNNRPVYIPQPRP 54


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 306 VTNFMWNLM*KNGNCGYISDTLACNKRS 389
           + +FM NL+ +    G+  D LA ++RS
Sbjct: 476 LASFMGNLLQETRTPGFGKDVLATDERS 503


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 139 INPPAVKGNIRDETRPSPEPLK*IEIKVPEIAP 237
           ++PP     +R E  P  EP     + +P+  P
Sbjct: 23  LDPPTRPTRLRREAEPEAEPGNNRPVYIPQPRP 55


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 306 VTNFMWNLM*KNGNCGYISDTLACNKRS 389
           + +FM NL+ +    G+  D LA ++RS
Sbjct: 182 LASFMENLLQETRTPGFGKDVLATDERS 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,269
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)