Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p03f
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0121 - 20330511-20330707,20332250-20332343                       27   8.7  
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497...    27   8.7  
02_05_0911 + 32686737-32686872,32686982-32687017,32687761-32687780     27   8.7  

>11_06_0121 - 20330511-20330707,20332250-20332343
          Length = 96

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 361 PRSPPDAKARSILSKGCFSIVPSMGIKKS 275
           PRS P   A  +L+ GC  +  S+G+  S
Sbjct: 64  PRSKPPNYAMGVLNDGCIGVHDSVGVASS 92


>09_04_0695 -
           19547101-19548010,19548089-19548587,19549461-19549728,
           19551025-19551687,19551849-19552060,19552203-19552593,
           19552659-19553107,19553454-19553790
          Length = 1242

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 492 LQDRLLCHVDHVLGFRENGNDCDYALVCRCEA*VHEVLNAGTH 364
           +++RL   +D++ G  EN   C YA+V    A  HE +    H
Sbjct: 176 VRERLGPKMDYIPGLPENHPACGYAVVVADAAMEHEAMRLYNH 218


>02_05_0911 + 32686737-32686872,32686982-32687017,32687761-32687780
          Length = 63

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 488 WSTWWNYYVFSCGKNC 535
           W  WW+ +VF+C   C
Sbjct: 17  WREWWDGFVFACNTPC 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,149
Number of Sequences: 37544
Number of extensions: 311505
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)