Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p03f
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z50863-1|CAA90736.3|  353|Caenorhabditis elegans Hypothetical pr...    36   0.029
Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U53336-2|AAA96175.1|  571|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    28   5.9  
AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in ...    27   7.8  
AF016451-3|AAB66001.1|  388|Caenorhabditis elegans Prion-like-(q...    27   7.8  

>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 49/150 (32%), Positives = 62/150 (41%), Gaps = 9/150 (6%)
 Frame = +3

Query: 120 HSHSHSDE--SPAFKYSKHANEQKEHDK----IYEPDYNLYVSALCSTXXXXXXXXXXXX 281
           H HSH D   S   + +K   ++ ++      + +    L+V A+ +T            
Sbjct: 118 HGHSHEDHGHSHGAESAKQVGDEYQYTGFLSFLNDAKTRLWVYAISATLLISAAPCFILM 177

Query: 282 XXXXDG-TIEKQPLLKILLAFASGGLLGDAFLHLIPHALMPHNDKQG--XXXXXXXXXGT 452
                  T E  PLLK+LLAF SGGLLGDAFLHLIPHA  P  D  G           G 
Sbjct: 178 FIPIQANTSESGPLLKVLLAFGSGGLLGDAFLHLIPHA-TPAGDGHGHSHSHGHSHGGGG 236

Query: 453 QEHGPHDXXXXXXXXXXXXXXXXXEKTVRL 542
             HG HD                 EK VR+
Sbjct: 237 HSHGAHDMSVGGWVLGGIIAFLTVEKLVRI 266


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +3

Query: 315 PLLKILLAFASGGLLGDAFLHLIPHALMPHN 407
           P LKILLAF +GGLLGDA LH+IPH+L PH+
Sbjct: 113 PFLKILLAFGAGGLLGDALLHIIPHSLSPHD 143


>Z50863-1|CAA90736.3|  353|Caenorhabditis elegans Hypothetical
           protein C14H10.1 protein.
          Length = 353

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +3

Query: 312 QPLLKILLAFASGGLLGDAFLHLIPHA 392
           Q  L +LL FA G LL D FLHL+P A
Sbjct: 144 QRRLNLLLGFAIGSLLADVFLHLLPEA 170


>Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical
           protein T23D5.12 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 332 EYFK*GLLFNCTIYGYKEKYKEWHYTYKQCRTQSTDV*VVIWFINFIMFFLFVGMFGVLK 153
           E  K GL+F C IYG    +    + Y+       D   +IWF  ++M    +  FG+  
Sbjct: 89  EIMKIGLVFFCGIYGSTICFISVQFLYRYWAL--FDAPKLIWFEGWMMSAWLIYSFGIGA 146

Query: 152 SW 147
           +W
Sbjct: 147 TW 148


>Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical
           protein T23D5.10 protein.
          Length = 364

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 332 EYFK*GLLFNCTIYGYKEKYKEWHYTYKQCRTQSTDV*VVIWFINFIMFFLFVGMFGVLK 153
           E  K GL+F C IYG    +    + Y+       D   +IWF  ++M    +  FG+  
Sbjct: 103 EIMKIGLVFFCGIYGSTICFISVQFLYRYWAL--FDAPKLIWFEGWMMSAWLIYSFGIGA 160

Query: 152 SW 147
           +W
Sbjct: 161 TW 162


>U53336-2|AAA96175.1|  571|Caenorhabditis elegans Hypothetical
           protein K07C11.4 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 107 SKCHN*SKICYTTPYKHFHNFTNLKPITSKPHIQH 3
           SK H    I Y  P  H + F   +P+   PHI H
Sbjct: 43  SKYHVFLGIRYGNPPDHIYRFQKPEPVEKWPHINH 77


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 362 RCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWNYYVFSCGKNCQ 538
           +C PA NT C+   Q+  +A  Q +  + N  T +  +N  + +T  N    +C   CQ
Sbjct: 218 QCEPACNTQCSDICQQTAQATQQVYNQNMNQNTNTQMYNPYNTNTSQN---ANCAPACQ 273


>AF016674-1|AAB66132.1|  160|Caenorhabditis elegans Hypothetical
           protein C03H5.4 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -2

Query: 119 CINYSKCH---N*SKICYTTPYKHF 54
           C N+ KC+   +  K C+TTP+++F
Sbjct: 61  CANHDKCYEDLDLKKTCWTTPFEYF 85


>AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 7 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 362 RCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWNYYVFSCGKNCQ 538
           +C PA NT C+   Q+  +A  Q +  + N  T +  +N  + +T  N    +C   CQ
Sbjct: 218 QCEPACNTQCSDICQQTAQATQQVYNQNMNQNTNTQMYNPYNTNTNQN---ANCAPACQ 273


>AF016451-3|AAB66001.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 5
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 362 RCVPAFNTSCTHASQRQTRA*SQSFPFSRNPRTWST*HNSRSWSTWWNYYVFSCGKNCQ 538
           +C PA NT C+   Q+  +A  Q +  + N  T +  +N  + +T  N    +C   CQ
Sbjct: 218 QCEPACNTQCSDICQQTAQATQQVYNQNMNQNTNTQMYNPYNTNTNQN---ANCAPACQ 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,969,275
Number of Sequences: 27780
Number of extensions: 296535
Number of successful extensions: 860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)