Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13p03f
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 215 VIWFINFIMFFLFVGMFGVL 156
           VI +INF  FF   GM  VL
Sbjct: 6   VIKYINFDRFFFIEGMTNVL 25


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 553  PPLKSLTVFSTTKNVIIPPSTPRP 482
            PP  S    S  +   +PPS+P+P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSPQP 1292


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 123 SHSHSDESPAFKYSKH 170
           S SHS E  +FK SKH
Sbjct: 702 SGSHSWEGDSFKVSKH 717


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 304 IVPSMGIKKSIKNGTILINNVE 239
           ++P    +K   NGT++I NVE
Sbjct: 530 VLPINRKQKVFPNGTLIIENVE 551


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 135 SDESPAFKYSKHANEQKEHDKIYEPDYN 218
           S  S  +KYS + N    ++  Y  +YN
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 135 SDESPAFKYSKHANEQKEHDKIYEPDYN 218
           S  S  +KYS + N    ++  Y  +YN
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 135 SDESPAFKYSKHANEQKEHDKIYEPDYNLYVSAL 236
           S  S  +KYS + N    + K+Y  +Y + +  +
Sbjct: 83  SSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQI 116


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +2

Query: 494 TWWNYYVFSC 523
           TWW Y + +C
Sbjct: 164 TWWPYDILNC 173


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 593 IISLLFVSMRMSMTPTKKSDSFFHN 519
           I  +LFV      T TK   ++FH+
Sbjct: 18  IFGVLFVLFSFLRTRTKLQPTYFHH 42


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 593 IISLLFVSMRMSMTPTKKSDSFFHN 519
           I  +LFV      T TK   ++FH+
Sbjct: 18  IFGVLFVLFSFLRTRTKLQPTYFHH 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,953
Number of Sequences: 438
Number of extensions: 3756
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)