Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13o22f
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 59 6e-10
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 50 2e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 1e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 4e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.001
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 38 0.001
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 37 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.003
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 37 0.003
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.005
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.009
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.011
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 35 0.011
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 33 0.035
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.046
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.11
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.11
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.19
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.32
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.32
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.43
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.43
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 29 0.75
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 28 1.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 28 1.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 28 1.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 1.7
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M... 27 2.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 3.0
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 4.0
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 4.0
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 5.3
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 26 5.3
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 26 5.3
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 7.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.0
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 7.0
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 25 7.0
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 9.2
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 25 9.2
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.2
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.2
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 25 9.2
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 58.8 bits (136), Expect = 6e-10
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Frame = +2
Query: 113 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSS-IEENKTFAFITLSASNYDIESCI 289
R++V + + +L FS+FG V++L++ KS+ + + FA++ + C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 290 KCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKET---EKEQQHET-IPNQNPIINL 457
++ FKGS+L + AR +L +LQ+E+ A + T EK + H + + ++P+ +
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNNDEKNEDHSSKVDLEDPVFH- 124
Query: 458 SEKLNPRKRKFESHVVNTYSDTEQ 529
E + P K VV T SD +
Sbjct: 125 GEIIVPGKHSKNMQVV-TDSDVRK 147
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/139 (23%), Positives = 68/139 (48%)
Frame = +2
Query: 110 TRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 289
T +++ N+ E E F +FG++ SL L K ++ + F F+ A++ + +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSL-VKDQNDKPRGFGFVNY-ANHECAQKAV 318
Query: 290 KCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKL 469
+E+KG +LYV RA++ ER + R ++ + EK +++ + I NL +++
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKH-EREEELRKRYEQMKLEKMNKYQGV--NLFIKNLQDEV 375
Query: 470 NPRKRKFESHVVNTYSDTE 526
+ + K E T + +
Sbjct: 376 DDERLKAEFSAFGTITSAK 394
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.0 bits (109), Expect = 1e-06
Identities = 29/82 (35%), Positives = 42/82 (51%)
Frame = +2
Query: 107 GTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESC 286
G LFVS I EDEL+ FSKFG V + + + + ++ F F++ S + S
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE-EATSA 158
Query: 287 IKCFTSEEFKGSRLYVTRARES 352
I S+EF G L V +A+ S
Sbjct: 159 IDNLNSQEFYGRVLNVQKAKRS 180
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 1e-04
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Frame = +2
Query: 98 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDI 277
M+ + LFV N+ T +D+L FS G + + EN+ + F+T S D
Sbjct: 1 MNSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE-DA 59
Query: 278 ESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNP-IIN 454
+ K +++ G L + A + ++N+A +K ++ + I P I
Sbjct: 60 QRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIK 119
Query: 455 LSEKLNPRKRKF 490
+ L P KF
Sbjct: 120 KPQHLEPHFSKF 131
Score = 29.5 bits (63), Expect = 0.43
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +2
Query: 113 RLFVSNIPENTNEDE-LRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 289
RL + N+P + + + L FSKFGKV + + K FAF+ + E +
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGG-GRMCGFAFVWMK-DRKAAEEAM 165
Query: 290 KCFTSEEFKGSRLYVTRA--RESF-LERLQRERNEAQRKETEKEQQHETI 430
E G + V A +++F L+ +E + KE ++ H +
Sbjct: 166 NSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIV 215
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.5 bits (88), Expect = 4e-04
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 116 LFVSNIPENT--NEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 289
LFV N+ +N N +L FSKFG++ S L S E +K + F++ S ++ I
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS-HPFEAVQAI 479
Query: 290 KCFTSEEFKGSRLYVTRA--RESFLERL 367
F RL+V A RE +RL
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRL 507
Score = 33.5 bits (73), Expect = 0.026
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDL----KCKSSIEENKT-FAFITLSASNYDIE 280
++V N+P +L F FG + + K KS+ ++ T FAFIT + +
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFE-NKCSAD 80
Query: 281 SCIKCFTSEEFKGSRLYV--TRARESFLERLQRERNEAQRKETEK 409
+ I F+G+ L V T E + +L+ ++ EK
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEK 125
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 98 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDI 277
+S RLF+ N+ + ED+L+ F FG++ + + K FA+I ++ +
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378
Query: 278 ESCIKCFTSEEFKGSRLYV--TRARESFL 358
+ ++ ++ F+G L+V +AR S L
Sbjct: 379 RAYLE-LDAKPFQGRLLHVLPAKARSSIL 406
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSL 199
L V N P T+ +EL FS FG++ +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRI 535
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/118 (17%), Positives = 48/118 (40%)
Frame = +2
Query: 95 SMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYD 274
S GT++ + N+P + +++ +G++ S+ + K + FAF + +
Sbjct: 716 SKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDRSARGFAFAEFVTAR-E 773
Query: 275 IESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPI 448
+ ++ + G L + A + ++ +Q E KE E +I + I
Sbjct: 774 AANAMRALKNTHLLGRHLVLQYASNATMDDMQ-HAIEKMAKEANAEAAAPSITGKRLI 830
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 37.9 bits (84), Expect = 0.001
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +2
Query: 92 LSMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI------T 253
L P T++FVSNI ++LR F FG+V LDLK + I +
Sbjct: 88 LGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSS 147
Query: 254 LSASNYDIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIP 433
+S + + + ++ F G L V R+ L E + EK+ Q ET+
Sbjct: 148 ISVAAHSAKIAVQQANGLRFSGKPLSVVLDRDG---SLCEEAFKKALNAVEKQFQEETLQ 204
Query: 434 NQ 439
Q
Sbjct: 205 KQ 206
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 36.7 bits (81), Expect = 0.003
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +2
Query: 110 TRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 289
TRLFV IP +++ F +G++ LD K + F F+ + + D +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQI--LDCKLMNG------FGFVEVEDAR-DARDIV 54
Query: 290 KCFTSEEFKGSRLYVTRARESFLERLQRE 376
F +EF GSR+ V AR ER +RE
Sbjct: 55 NDFQGKEFMGSRIVVEPARG---ERRRRE 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 101 SPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI 250
S +++ N+ + NED++ C FS+FG+ ++L ++K FAF+
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +2
Query: 356 LERLQRERN-----EAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSD 520
L +LQR+R EA E++++ + + + ++N+ E L S + S+
Sbjct: 17 LRKLQRQRQTELLEEALDSESDEDDEFSSTSGKK-VVNVFEILEKENNAINSEAEKSVSE 75
Query: 521 TEQQHETIPNQNPIINLSEKLNPRKRK 601
EQ + ++PI++ ++K +K+K
Sbjct: 76 EEQDEPLVEGESPIVSTNKKAKNKKKK 102
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.9 bits (79), Expect = 0.005
Identities = 32/146 (21%), Positives = 61/146 (41%)
Frame = +2
Query: 113 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIK 292
++FV +P + E+E R F++FG+V L + F F+T Y+ ES ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVT-----YENESAVE 302
Query: 293 CFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLN 472
S+ Y+T + ++R +A +++ QH N NP ++ +N
Sbjct: 303 ATMSQP------YITIHGKPV--EVKRATPKASLRDSHDRHQHGYHGNANPY--YAQNMN 352
Query: 473 PRKRKFESHVVNTYSDTEQQHETIPN 550
+ + Y +Q E + N
Sbjct: 353 MYGGMTPAMMAQYYRQMQQYMEAMRN 378
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 113 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFIT 253
++F+ + T +D LR F +FG+V + S+ ++ F F+T
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLT 210
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.1 bits (77), Expect = 0.009
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIKC 295
LFV N+P++++ + L+ F + G+V S+ + + K +AF+ D+ S
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 296 FTSEEFKGSRLYV---------TRARESFLERLQRERNEAQRKETEKEQQ 418
F +K ++ + T AR + ++ R+ E R+ E+Q
Sbjct: 154 FHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVASEEQ 203
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 34.7 bits (76), Expect = 0.011
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSI 223
+F+ N+P + +E E+ AF KFGK+ + + K +I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNI 336
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 34.7 bits (76), Expect = 0.011
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIK 292
L V+N+ ++T E+ELR F +FG + + L K FAF+ S YD + IK
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFV----SYYDRDCAIK 258
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 33.1 bits (72), Expect = 0.035
Identities = 18/85 (21%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +2
Query: 356 LERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEK--LNPRKRKFESHVVNTYSDTEQ 529
LE+L++ER Q ++ KE++ + + + L ++ LN +++ + +N +
Sbjct: 127 LEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQILNKERQQLK---LNNFFTKGV 183
Query: 530 QHETIPNQNPIINLSEKLNPRKRKF 604
+ PN+N + + +++LN +++F
Sbjct: 184 EKRIAPNENFVADKTDELNEFEKEF 208
Score = 28.3 bits (60), Expect = 0.99
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 305 EEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETI 430
++ + R R R+ ERL+RE+ QR++ +K ++ E I
Sbjct: 78 KKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKI 119
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.046
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Frame = +2
Query: 77 Q*NCKLSMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKT----FA 244
Q N + R+FV + +T + E+R F G V + + + + A
Sbjct: 33 QSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIA 92
Query: 245 FITLSASNYDIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 424
F+T + + D++ I+ + + V +AR E+ ++R +++ K E+ +
Sbjct: 93 FVTFN-NQEDVDKAIETLNGKTLDDREIVVQKAR-PVQEQPIKDRKKSKNKNGEEPETST 150
Query: 425 TIPN 436
++ N
Sbjct: 151 SVEN 154
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/107 (20%), Positives = 44/107 (41%)
Frame = +2
Query: 104 PGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 283
P LFV + T +++L FS+FGK+ S + ++ +AFI + +E
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFD-NKESVEK 300
Query: 284 CIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 424
+ SR++V ++ R N +++ + + E
Sbjct: 301 AYFKMQNVLIDDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDRE 347
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 110 TRLFVSNIPE-NTNEDELRCAFSKFGKVNSLDL 205
T L V NIPE + NE+ +R FSKFG + ++L
Sbjct: 242 TALEVRNIPEEHFNEENIRSFFSKFGVLEKVEL 274
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI 250
L+V +P E ++R FS+FG V L + +K +AFI
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +2
Query: 113 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIK 292
++++SN+P N ED++ FG + S L + +K F F + D E I
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS-DAEVAIS 369
Query: 293 CFTSEEFKGSRLY 331
++ G++L+
Sbjct: 370 GLDGKDTYGNKLH 382
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.9 bits (64), Expect = 0.32
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 283
LF+SNI +E++++ F ++ +++ L+C + + AFI L A+ DI++
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFISARVLRCVDG--TSTSIAFIWL-ANESDIQN 127
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 110 TRLFVSNIPENTNEDELRCAFSKFGKV 190
T ++V +PEN ELR F FG++
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEI 202
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.43
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 296 FTSEEFKGSRLYVTRARESFLE---RLQRERNEAQRKETE--KEQQHETIP-NQNPIINL 457
F++ S YV RA ESF + RNE R+ T Q T P +NP +
Sbjct: 278 FSASPIDPSMSYVYRAPESFSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYTRNPELRT 337
Query: 458 SEKLNPRKRKFE 493
S KL RKR+ E
Sbjct: 338 SHKLAERKRRKE 349
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.43
Identities = 24/92 (26%), Positives = 43/92 (46%)
Frame = +2
Query: 95 SMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYD 274
S S +++ +P NT+++ L ++FGKV+S K + F A +
Sbjct: 291 STSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF----ACFEE 346
Query: 275 IESCIKCFTSEEFKGSRLYVTRARESFLERLQ 370
+S + C ++ G + + A+ESF RLQ
Sbjct: 347 EKSALICISAMTLCGYQ--CSFAKESFSARLQ 376
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 0.75
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 329 YVTRARESFLERLQRERNEAQRKETEKEQQHETIP 433
Y R E+FL R+QR R E+ +E EK+++ +IP
Sbjct: 62 YRVRESEAFLIRMQR-RLESAEEEFEKQRRASSIP 95
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 104 PGTRLFVSNIPENTNEDELRCAFS 175
P ++V N+P +T+E+EL+ FS
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFS 447
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 198 KLFTLPNLENAHRNSSSFVFSGIL 127
KL+ LP++E A S +FSGIL
Sbjct: 275 KLYLLPSIEKALLRSPEIIFSGIL 298
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 338 RARESFLERLQ--RERNEAQRKETEK-EQQHETIPNQNPIINLSEKLNPRKRKFESHVVN 508
R + +E+++ ++R +R+E E Q ++ + I L +++ +++ ES+
Sbjct: 748 RDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISETEKELESYAGQ 807
Query: 509 TYSDTEQQHETIPNQNPII 565
++H NQ P+I
Sbjct: 808 LQDAKNEEHRIRDNQRPVI 826
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 116 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSI 223
+F+ N+P EDE+R FG ++ + + + +I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNI 243
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.5 bits (58), Expect = 1.7
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +2
Query: 200 DLKCKSSIEENKTFAFITLSASNYDIESCIKCFTSEEFKGSRLYV-TRARESFLERLQRE 376
DLK K + + A + L+ SN + F E K LY + L
Sbjct: 276 DLKLKDDTFNDYSSASMELNTSNLRARASFSNFMENEKK---LYEKVNTNRTLLRNANLT 332
Query: 377 RNEAQRKETEKEQQHETIPNQNPIINLSEKL 469
NEAQ+ ++ P+ N + +L EK+
Sbjct: 333 LNEAQQSVKSLTERQGPRPSDNGVQDLQEKM 363
>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 461 EKLNPRKRKFESHVVNTYSDTEQQHETIPNQNPIINLSEKLNPRKRKFE 607
++ N +KR+FE+ TY+D + ++ + N +N ++ N +KR+FE
Sbjct: 50 DRPNLKKREFEAAPAKTYADFLRAYQ---SWNTFVN-PDRPNLKKREFE 94
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 LFVSN-IPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKT 238
L SN IPEN + +RC F ++++++ + +++ +T
Sbjct: 477 LSTSNVIPENNRQQFIRCVFHNIMQIHAVNSRLSNALNRTQT 518
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 98 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAF 247
M+P ++V NIP E+++ F + G V S L + K + F
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.0
Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Frame = +2
Query: 110 TRLFVSNIPEN--TNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 283
+ L+V N+ + T + +L FS FG + S L C + +K + F+ IE+
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR----QIEA 437
Query: 284 CIKC---FTSEEFKGSRLYVTRA--RESFLERLQRERNEAQRKETEKEQQHETI---PNQ 439
++ R++V A + + RLQ E +Q ++ + P +
Sbjct: 438 AVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFVKPER 497
Query: 440 NPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETIPNQN 556
+ + + + + K + S E ++E +N
Sbjct: 498 SSTVTIRKPIESSTNKISENPTTLSSKVENKNEPKTGEN 536
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +2
Query: 263 SNYDIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQN 442
S ++E +K S +++ ++ LE L++ N +K+++ E + N
Sbjct: 28 SQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVEKPVSGN 87
Query: 443 PIINLSE-----KLNPRKRKFESHVVNTYSDTEQQHETIPNQNPIINLSEKLNPR 592
LSE K R+R+FE+ + + ++ + P II S +L R
Sbjct: 88 QFSLLSEEDEVDKKEKRRRRFENGSRSQNNAKSEELKVNPENGAIIGRSTELEKR 142
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 335 TRARESFLERLQRERNEAQRKETEKEQQHETIPNQNP 445
T R F+E ++R+R Q+++ + +QQ + Q+P
Sbjct: 286 TFQRLQFIENVRRKRAILQQRQMQMQQQQKAQQQQSP 322
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 485 KFESHVVNTYSDTEQQHETIPNQNPIINLSEK 580
KF+ ++ Y T+ + + + +NP+I LSEK
Sbjct: 225 KFDRGYISPYFITDVKSQKVEFENPLILLSEK 256
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/83 (18%), Positives = 41/83 (49%)
Frame = +2
Query: 332 VTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNT 511
V R E L+ ++++ + + + +++ +P++ P++ + LN S N
Sbjct: 1411 VRRFEELSLQLQEKQKRDEELIKARRKRALPVVPSK-PVVEVFNDLNEAFDDENSEDENG 1469
Query: 512 YSDTEQQHETIPNQNPIINLSEK 580
+DT++ T N + + ++S++
Sbjct: 1470 INDTKENRATESNFSGVDSMSKE 1492
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/78 (21%), Positives = 31/78 (39%)
Frame = +2
Query: 350 SFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQ 529
S R R+ R + T + + NLS LN +K + H V D+E
Sbjct: 272 SNFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLSNLSSSLNDKKSPNDDHAV---LDSEL 328
Query: 530 QHETIPNQNPIINLSEKL 583
+T+P+ + ++ +
Sbjct: 329 MEQTLPDSAEAVEIANNV 346
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 269 YDIESCIKCFTSEEFKGSRLYVTRARESFLE 361
Y + SC+ F S KGS +YV +E ++
Sbjct: 73 YFLASCLLTFWSSVVKGSTVYVATKKERHIK 103
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/61 (19%), Positives = 28/61 (45%)
Frame = +2
Query: 350 SFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQ 529
SF++ + RE + A + ++Q + + P + ++ N RK+ + + EQ
Sbjct: 108 SFVKEMFREEDSAVEQGQMNDKQQLLLESSEPTPTIKQQFNDRKKNAQIREREALAKREQ 167
Query: 530 Q 532
+
Sbjct: 168 E 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 257 SASNYDIESCI---KCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKE 400
S SNY + C + + + TR +E LER ++ RN+ K+
Sbjct: 206 SRSNYPESTAFCEANCPSGNDASNKEFFETRRKEFQLERREQNRNQKSSKQ 256
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 347 ESFLERLQRERNEAQRKETEKE-QQHETIPNQNPIINLSEKLNPRKRKFES----HVVNT 511
+ LE E NEA++ + EKE + + ++ + LS+K+ + +K +V
Sbjct: 79 KGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIVTI 138
Query: 512 YSDTEQQHE 538
+D E++ +
Sbjct: 139 ANDEEEEDD 147
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 113 RLFVSNIPENTNEDELRCAFSKF 181
RLFV N+ + N++ L AFS++
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEY 53
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 25 CTHKYKLRIFNNFSQVFSM 81
C KY R FN FS+ FS+
Sbjct: 294 CRSKYNERTFNIFSETFSL 312
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +2
Query: 272 DIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPII 451
D+E I+ SE+ + + ++FLE E + A + ++ + +PN+N
Sbjct: 49 DVEKFIQNVNSEDTPSED--DSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQD 106
Query: 452 NLSEKLNPRKRKFESH 499
+ SE + ES+
Sbjct: 107 STSESSEEEEDGLESY 122
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 446 IINLSEKLNPRKRKFESHVVNTYSD-TEQQHE 538
++N +N +++ HV+ ++SD TEQ++E
Sbjct: 69 LLNTRRNINLLDKQYAKHVLPSFSDKTEQENE 100
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 359 ERLQRERNEAQRKETEKEQQHE 424
ER QR + + ++KE +KEQ+ E
Sbjct: 135 ERKQRLKEQREKKEQKKEQKKE 156
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 314 KGSRLYVTRARESFLERLQRERNE 385
+GSR V +A++ ERLQ +N+
Sbjct: 1255 QGSRAGVVKAKDLIFERLQENQNQ 1278
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +2
Query: 347 ESFLERLQRERNE-AQRKETEKEQQHE 424
E FL++ ++ER + A++KE +KE++ E
Sbjct: 279 EYFLKKEEKERKKRAEKKEQQKEKKKE 305
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 9.2
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 305 EEFKGSRLYVTRARESFLERLQRERNE----AQRKETEK----EQQHETIPNQNPIINLS 460
+E + L T R SFL+++ + +E A+++E +K +Q++ + + + NL
Sbjct: 77 QEVEKPTLSATVGRVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQNDDGSDDDEVENLK 136
Query: 461 EKLNPRKRKFESHVVN 508
L +K ESH+++
Sbjct: 137 NDLELQKLLRESHLLH 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,133
Number of Sequences: 5004
Number of extensions: 47688
Number of successful extensions: 248
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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