Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13o22f
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.088
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    26   0.35 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.82 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.82 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 365 LQRERNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVVNTYSDTEQQHETI 544
           + +E++    KET  +++ +T     P+I+ S K    ++K E   +N +  T +Q   +
Sbjct: 777 VNKEQSPNSTKETTPKKERKTATTTQPVIS-SRK---EQKKSEEKNINDHCVTTEQSVVV 832

Query: 545 PNQNPIIN 568
            N    IN
Sbjct: 833 TNVTTTIN 840



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/43 (18%), Positives = 26/43 (60%)
 Frame = +2

Query: 377  RNEAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRKFESHVV 505
            +++ Q ++++++QQ +TI       ++ +  N +++  + HV+
Sbjct: 973  QSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVL 1015


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 305 EEFKGSRLYVTRARESFLERLQRERNEAQRKETE--KEQQHETIPNQNPIINLSEKL 469
           + +K  R Y  + RE+  ER +  R   + KE++      ++TI N N   N ++KL
Sbjct: 281 KSYKNEREY-RKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKL 336


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 326 LYVTRARESFLERLQRERNEAQRKETEKEQQH 421
           LY     ESF +R QRE     RK  EK  +H
Sbjct: 430 LYCLAGDESFRKRRQREAAGNCRKRGEKIARH 461


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 320 SRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 424
           S L   R  +S   R Q  +NE QRKE E+ ++ E
Sbjct: 43  SSLNSLRNHKSIYHR-QHSKNEQQRKEMEQMRERE 76


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 336 LELVKVFLKDYKEKGMKHKERKQKRNSSMRLYPTKIQSL 452
           L   K F+K  +E+  KH   K++ +   R    +++ L
Sbjct: 90  LTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,891
Number of Sequences: 438
Number of extensions: 3536
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)