Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13o14f
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.010
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 34 0.017
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.040
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.16
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.16
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.16
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.16
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.28
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.37
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.50
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.65
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 0.87
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 0.87
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 1.5
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 27 1.5
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 1.5
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 27 2.0
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.0
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 2.6
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 4.6
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 6.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces... 25 8.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 8.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 308 KMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITG 421
KMFVG VP E + R F +FGRV ++ DK TG
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTG 285
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 272 EDKSEMPDP---DYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
ED +E P + KMF+G + ++ LR FE+FG V V+RD TG S+
Sbjct: 149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSR 204
Score = 33.5 bits (73), Expect = 0.023
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 471 NRNERKLFVGMLNKKLAENDVRALFSGHGAIEECTVL 581
NR + K+F+G LN + ++ +R F G + +CTV+
Sbjct: 159 NREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 299 DYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
D +++G + ++E+D+ +F EFG IN++RDK TG SK
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSK 72
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 275 DKSEMPDPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVS 427
D+ + DP Y MF+ ++ E+D+ + F +G + +I V+R+K+TG S
Sbjct: 91 DRHVIGDP-YKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKS 140
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
+FV + M E++L+Q+F +FG V + ++R+ +T S+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASR 142
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 447 QMKPADSENRNERKLFVGMLNKKLAENDVRALFSGHGAIEECTVL 581
Q P SEN LFV + ++ E++++ +FS G + ++
Sbjct: 90 QSAPEGSENLGN-DLFVSGIASRMQEDELQQIFSKFGTVTHVRIM 133
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.010
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
+FV Q+ + +L FE+ G V ++RDKI+G SK
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSK 281
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 33.9 bits (74), Expect = 0.017
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
++VG++P E +R F +FG V ++ + R++ TG SK
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.040
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 293 DPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDK 412
DP++ ++FVG + +++ L Q F E+ + + V+RD+
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR 65
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.16
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
+FVG++ ++D+ L Q FEE+G + V+ D +G SK
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSK 304
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.16
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 305 IKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDK 412
I ++VG +P +DL ++FE FG + ++L K
Sbjct: 20 ISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRK 55
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 30.7 bits (66), Expect = 0.16
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 293 DPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINV 400
DP +FVG + ++ E DL+ F+ FGR+ I +
Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.7 bits (66), Expect = 0.16
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDK 412
+F+G +P E ++ + F +FG++ I +L K
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKK 334
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVS 427
+FV ++ + DL +F FG++ V+RDK TG S
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDS 284
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 480 ERKLFVGMLNKKLAENDVRALFSGHGAIEECTVL 581
E LFV LN + D+ +FS G I C V+
Sbjct: 243 ENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.37
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 344 ENDLRQMFEEFGRVHQINVLRDKITGVSK 430
E +LR +F FG + ++ + +DK TG +K
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAK 243
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.50
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 477 NERKLFVGMLNKKLAENDVRALFSGHGAIEECTVL 581
+E +LFVG + + D+ F G+G I +C ++
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.65
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 296 PDYIK-----MFVGQVPRHMDENDLRQMFEEFGRVHQI 394
PD IK +F+G + R + E LR MFE FG V +
Sbjct: 398 PDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSL 435
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 456 PADSENRNERKLFVGMLNKKLAENDVRALFSGHGAIE 566
P DS R LF+G + + + E +R++F G+++
Sbjct: 397 PPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQ 433
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.3 bits (60), Expect = 0.87
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDK 412
+++G + L++ FEEFG + +N R+K
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREK 449
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 28.3 bits (60), Expect = 0.87
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 284 EMPDPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLR 406
E P Y +F+ + + END++ +F+ + + VLR
Sbjct: 66 EWQKPSYYMLFISNIDPEVSENDIKYLFQRYNFI-SARVLR 105
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 281 SEMPDPDYIKMFVGQVPRHMDENDLRQMFEEFGRV 385
++ DP+ ++V Q+P ++ +LR F FG +
Sbjct: 168 NQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEI 202
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 308 KMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
++F+ + E+DL+ +F FG++ Q+++ DK T K
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPK 364
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 483 RKLFVGMLNKKLAENDVRALFSGHGAIEE 569
++LF+ L AE+D+++LF G +E+
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQ 351
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 210 IFIPFGLVYGDPGEVTLWFLLGCVC 136
IF+ F +VYG ++LW+ + C+C
Sbjct: 215 IFLSFSIVYG---LISLWWAIRCIC 236
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/48 (22%), Positives = 27/48 (56%)
Frame = +2
Query: 299 DYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSKDAPS 442
D ++FVG++ ++++R +FE G V ++ + ++ ++ PS
Sbjct: 42 DDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPS 89
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 278 KSEMPDPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
+S +P I +FVG + + DL++ F + G++ ++ ++ + TG K
Sbjct: 220 QSSKKEPSSI-LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCK 269
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 287 MPDPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRDKITGVSK 430
MP +FVG + +E L + F + G + + ++RD T + K
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGK 311
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 2.6
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2
Query: 311 MFVGQVPRHMDENDLRQMFEEFGRVHQINV 400
+FVG + + + E +L+ +F+ FG + + +
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKI 334
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 287 MPDPDYIKMFVGQVPRHMDENDLRQMFEEFGRVHQINVLRD 409
+ D + +++ +P H +E+D+ +F+ ++ VLRD
Sbjct: 378 LQDTESTNLYISNLPLHWNESDISTLFKP-SKIISNRVLRD 417
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 533 HVVLSQFLVQHTHEKLPF 480
H+ L FL+ H H LPF
Sbjct: 1713 HLKLQDFLLSHLHNPLPF 1730
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 381 ESTRSTCSGIRSPESAKMHHPIQMKPADSENRNERK 488
+STRS S + S S I ++ A SEN+NE K
Sbjct: 16 DSTRSRGSDVDSFTSTDNVTQINVEAAISENKNEEK 51
>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 155
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 315 SSVRYQDTWTRMTSGRCLRSLVESTR 392
+SVR +DT+ R G C+ S + TR
Sbjct: 56 NSVRVEDTFKRSDDGLCVYSELSCTR 81
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +2
Query: 308 KMFVGQVPRHMDENDLRQMFEEFGRVHQINVL 403
+++VG + ++ +DL F FG V + ++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,630
Number of Sequences: 5004
Number of extensions: 43547
Number of successful extensions: 189
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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