Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13o14f
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 309 RCSSVRYQDTWTRMTSGRCLRSLVESTRSTCSGIRSPESA 428
           RCS V + ++     S + L SL E     C  +R PE A
Sbjct: 72  RCSDVHHFESSFNAQSWQRLTSLHELHVHGCKVLRIPEGA 111



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 566 LDGSVSREQSSHVVLSQ 516
           LDG+V RE  +HV + +
Sbjct: 801 LDGNVLRELQNHVFIGR 817


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 575 GTLLDGSVSREQSSHVVLSQFLVQHTHEKL 486
           GT+ +G   REQ S   L +F    TH  +
Sbjct: 55  GTIFEGHDDREQPSVYPLLRFENPETHHPI 84


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 466 LSAGFIWMGWC 434
           LS+ F+W+G+C
Sbjct: 408 LSSLFLWLGYC 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,428
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)