Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13o03r
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    65   7e-13
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 64.9 bits (151), Expect = 7e-13
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 9/236 (3%)
 Frame = -1

Query: 712 LGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCWFD-GTNQXXXXXXXXXXX 536
           + +FP   G+  T     +P   +CGA++++   +LTAAHC  D  T +           
Sbjct: 169 INEFPMMAGIKRTY----EPGM-ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWS 223

Query: 535 XLFSGGTRV--ETSSIVMHPNWSPATIR----NDVAVIYLPSPVTLSDTINTIALPSGQE 374
                   V    + +++HP +          ND+A++     +   D +    LP  Q 
Sbjct: 224 SKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPF-QH 282

Query: 373 LQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTFAFPFVLQSSNLCTSG 194
             ++F GS     G+G TS +G +  + +L    L+++    C   +  ++ ++ +C   
Sbjct: 283 FLDSFAGSDVTVLGWGHTSFNGML--SHILQKTTLNMLTQVECYKYYGNIMVNA-MCAYA 339

Query: 193 RGGVGTCRGDSGGPLV--VTRNNRPILIGITSFGSGLGCQVNLPAAYARVTSFMNF 32
           + G   C+ DSGGP++    R  R + IGI S+G+  G     P    +V S++++
Sbjct: 340 K-GKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG---KYPNGNTKVGSYIDW 391


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 180 PTPPRPLVHKFEDCKTKGKANVQ 248
           P PP PL  + ED    G+A ++
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIE 462


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 180 PTPPRPLVHKFEDCKTKGKANVQ 248
           P PP PL  + ED    G+A ++
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIE 462


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 111 IPIKIGRLFLVTTRGPPESPRQVPTPPRPLVHKFEDC 221
           IP  IG L       P     Q+P  PR  +   EDC
Sbjct: 69  IPAWIGELSATKFGFPCLQYTQLPVNPRDKIEGAEDC 105


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 111 IPIKIGRLFLVTTRGPPESPRQVPTPPRPLVHKFEDC 221
           IP  IG L       P     Q+P  PR  +   EDC
Sbjct: 69  IPAWIGELSATKFGFPCLQYTQLPVNPRDKIEGAEDC 105


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 163  SGGPLVVTRNNRPILIGITSFGS 95
            +G P+V+   N+ + +G+++ GS
Sbjct: 1201 AGKPIVLASGNKNVGVGVSNSGS 1223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,040
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)