Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n24f
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    29   0.68 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.68 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    28   0.89 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   1.6  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   4.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   4.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.3  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.3  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.3  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.3  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   8.3  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 356 HSAYTRKIRPHPNRFSFGSTLNNTPPPPHQCSATR 460
           H+  +    PHP  FS  S  + T PPP   S +R
Sbjct: 346 HTQNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSR 380


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 423 LFSVEPNENRFGCGRIFRVYAECQ 352
           L + EP  + FGCG +F +  ECQ
Sbjct: 165 LATTEPYSSDFGCGSLFYMSPECQ 188


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 103 VSFTSAQDSLQVNTTEGTVEGSRAADGDYLTFYDIPYA 216
           VSF     S    T  G +  SR  D + + FYD+  A
Sbjct: 106 VSFNRLPKSASTKTKNGRIRSSRREDDNRIPFYDLDVA 143


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 422 NTPPPPHQCSATRKSSK---RT*FSC-L*TSVYQSSVSFASVFPTHQATLVSKTSS 577
           +TPPPP   S+T  SS     T  SC   TS+  +  S   V PT   T  S TS+
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 369


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 124 DSLQVNTTEGTVEGSRAADGDYLT 195
           D+ QVN   G V  SRA D DY T
Sbjct: 79  DTKQVNGAGGQVNHSRAEDSDYAT 102


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 223 TSGENRFKAPSPPTNYSGVYHAVNRNILCAQPNTRGLIGVENCLTLSIYTK-NTTTP 390
           T+G  R  A +     +GVYH+     L    +TRG        T  + TK ++TTP
Sbjct: 158 TAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKVSNATATTQLETKADSTTP 214


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 27  QHVRRVKKEKKHAEN 71
           Q +RR KK KKHAE+
Sbjct: 83  QEIRRKKKRKKHAES 97


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 383 PHPNRFSFGSTLNNTPPPPHQCSAT 457
           P    FSFG   NN P P    +AT
Sbjct: 459 PASGGFSFGQNANNAPKPAFGSTAT 483


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 265 NYSGVYHAVNRNILCAQPNTRGLIGVENCLTLSIYTKNTTTPKPVFV 405
           NYSG  +     ILC       L G E+C T+    KN +   P+ +
Sbjct: 238 NYSGWTNMGWSFILCFTTPVWVLSGFESCATIVEEAKNASKAAPIAI 284


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 352 LTLSIYTKNTTTPKPVFVWLNAEQYASTTTPVFS 453
           L++ +   N++T KP F W N+  Y      +F+
Sbjct: 82  LSMELKKPNSSTIKPCFTWANSVLYNDILIFIFA 115


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 457 CS*TLVWWWRRIVQR*AKRKPVWVWSYFSCIC*VSDSSL 341
           CS    WWWR  +        V+++S F     +S SSL
Sbjct: 548 CSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSL 586


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 506 RRKFRGTKTMFSSTIF-L*LNTGVVVEAYCSALSQ-TKTGLGVVVFFVYMLSVRQFSTPI 333
           R  FRGTK  F +TIF    +   +VE   +  S+ T   L   +FF+ + S+      +
Sbjct: 233 RGYFRGTKNSFKATIFEKNEDPDYIVEGVWTGESKLTIPSLKSTIFFLSIPSLEATPITV 292

Query: 332 RP 327
           +P
Sbjct: 293 KP 294


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 249 SLESVLSRCWTGVWYIV 199
           SLE  L RCW G+ +++
Sbjct: 213 SLEPALGRCWRGLLWLI 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,153
Number of Sequences: 5004
Number of extensions: 59581
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)