Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n24f
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0037 + 301864-302349                                             30   1.2  
01_06_1095 - 34484064-34484492,34484716-34485041,34485505-34485955     29   2.1  
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     29   2.8  
08_01_0177 + 1504472-1505033,1505035-1506647                           29   3.7  
08_02_1175 + 24927153-24927698,24928640-24929185                       28   4.9  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 27   8.5  

>07_01_0037 + 301864-302349
          Length = 161

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 447 HWCGGGGVLFSVEPNENRFGCGRI 376
           +WCGGGGV+ +V+  E   GCG +
Sbjct: 87  YWCGGGGVVAAVDGME---GCGTV 107


>01_06_1095 - 34484064-34484492,34484716-34485041,34485505-34485955
          Length = 401

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 235 NRFKAPSPPTNYSGVYHAVNRN--ILCAQPNTRGLIGVENCLTLSIYTKNTTTPK 393
           N+ K PS  T   G + +  +N  +L A  +   LIG + CLT   Y ++  TPK
Sbjct: 173 NKGKRPSRSTGQLGFWKSTTKNEAVLDALSDNM-LIGYKACLTYHEYDESMPTPK 226


>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 574 GCL*DQRCLVRREHRGK*NRRLIDGSSEARKLC 476
           GCL ++ C+ + E+  K NR ++ G  +  KLC
Sbjct: 26  GCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLC 58


>08_01_0177 + 1504472-1505033,1505035-1506647
          Length = 724

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 274 GVYHAVNRNILCAQPNTRGLIGVEN 348
           GV H   R++L  +P  RG++GVE+
Sbjct: 107 GVEHLALRDVLIREPAARGVVGVEH 131


>08_02_1175 + 24927153-24927698,24928640-24929185
          Length = 363

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 270 LWSVSCRQSEYFVRPAQHPGPYWSRELSDTQHIHEKY 380
           L SV+C +++ +      P P WSR+ +  + +H+ +
Sbjct: 314 LISVTCARNKLYAHFVTAPNPEWSRDEAVLRRLHQSF 350


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 186 LFDFLRYTIRRSNIWREQIQGS*SANELLWSVSCRQSEYFVRPAQH 323
           LFD +   + R N  R+ I+G     E L  ++C  +E   RP  +
Sbjct: 621 LFDMIDANVPRDNEARKMIEGGLFGQEALNIIACEGAERTERPESY 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,440,211
Number of Sequences: 37544
Number of extensions: 436666
Number of successful extensions: 1381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)