Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n19r
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 500 TSNDISYKNCLSRTTVNNIMEMYKSIKSGVNNVLIKKHFNSSLNDLCFHFK 652
           T  D++ ++  +  T N     Y+S   G       + F+S L+D   HF+
Sbjct: 679 TFQDVARRSVANSPTKNADSREYRSNSMGAVMTRNSEMFSSLLSDTEQHFR 729


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 506 NDISYKNCLSRTTVNNIMEMYKSIKSGVNNV 598
           N+  YK  +SR + +N   +  ++  G NN+
Sbjct: 449 NNHEYKRSVSRESNSNQFILMTTVNEGNNNM 479


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 81  KNKFVHSNFKHRSLEWERN*ILEENLRNVSIIF*NSLKQFRKRKHYKSALPDNN 242
           KN+  +  ++  S E  R+    E  R   II   S K      +YK    +NN
Sbjct: 284 KNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,889
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)