Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n19f
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.79 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.6  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   9.8  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   9.8  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   9.8  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   9.8  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   9.8  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   9.8  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   9.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 332 LLPSGIINQKCTSVIGNGVVIHLPGLFEELKKNELKGM 445
           L+ SGI  ++    +G  VV+ LPG+ E L  ++  GM
Sbjct: 330 LMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNHQSFGM 367


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 455 EGRLVISDRAHLVFDIH-QQVDGLQEAEKGKNSLGTTKKGI 574
           EG+  I+    L+ ++  Q VDG  +   GKNS  T  + I
Sbjct: 2   EGKDAITTEDILLLNLTTQDVDGFLQGFPGKNSPYTVTQAI 42


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 126 TPFPPRFIPPDMYRLRPPPNPR 147


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 374 TPFPPRFIPPDMYRLRPPPNPR 395


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 359 TPFPPRFIPPDMYRLRPPPNPR 380


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 536 SPLPGDRRPVDVYRKQDEPCPR 471
           +P P    P D+YR +  P PR
Sbjct: 375 TPFPPRFIPPDMYRLRPPPNPR 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,883
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)