Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13n18f
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 34 0.018
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 31 0.16
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 30 0.22
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.50
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.66
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.66
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.87
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 0.87
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 0.87
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.2
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.0
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 2.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.7
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 3.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 4.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 8.1
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 25 8.1
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 33.9 bits (74), Expect = 0.018
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 358 TRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDM-ELMQDENNRIREE 534
T D + ++++R L+ R AS ++ +LE +Q+ + + + D+ RE
Sbjct: 984 TDDNLRKLQERLADLRTRERNASDNLRLRALMRQLEEAVTQKNYLLSQQSHDDRESFRER 1043
Query: 535 IEALRSKYDALNVLR 579
++ L+SKY ALN R
Sbjct: 1044 MQILKSKYGALNAER 1058
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 30.7 bits (66), Expect = 0.16
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 493 MELMQDENNRIREEIEALRSKYDAL 567
M+L+ DEN R+RE+I LRS+ L
Sbjct: 612 MKLIMDENQRLREQIAVLRSRIQHL 636
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 382 KQRRRTLKNRGYAASCRIKRIEQKDELENEKS-QEWHDMELMQDENNRIREEIEALRS 552
KQ +NR A CRIK+ + L+++ + + EL+Q N+ +REEI LR+
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSAND-LREEIIKLRT 179
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.50
Identities = 23/128 (17%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = +1
Query: 166 KRVTHNQRIDDSKINMPHDLKELGGRKAINMAPLSPTPCAEISDDELVSISVRDLNR--- 336
+++ H +SK++ +LKE+ G+ ++++ L + ISD++ + + +L++
Sbjct: 839 QKLMHKHVNQESKVS---ELKEVNGKLSLDLKNLRSSLNVAISDNDQILTQLAELSKNYD 895
Query: 337 QLKMRGLTRDQ-IVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQE-WHDMELMQD 510
L+ + + ++ ++ L R+ ++ K ++E KS + + Q+
Sbjct: 896 SLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQE 955
Query: 511 ENNRIREE 534
E + ++EE
Sbjct: 956 EISNLKEE 963
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 436 KRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSK 555
K +++KD+ E + + +EN +I++E+ ALR K
Sbjct: 1085 KLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKK 1124
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.66
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 292 SDDELVSISVRDLNR-QLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELEN 468
S E++ R L + ++++R L R++ K+R + + + I +K ELE
Sbjct: 411 SQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYELEK 470
Query: 469 EKSQEWHDMELMQDENNRIREEIE 540
+ E D + DE E+ E
Sbjct: 471 SRGSELQDAKRRLDELKAKAEDAE 494
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 28.7 bits (61), Expect = 0.66
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 1/132 (0%)
Frame = +1
Query: 163 TKRVTHNQRIDDSKINMPHDLKELGGRKAINMAPLSPTPCAEI-SDDELVSISVRDLNRQ 339
T+ V+ ++ + S IN L R +P SP + S ++ R
Sbjct: 393 TRSVSDHRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTLS 452
Query: 340 LKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENN 519
+ + D + + YAAS +++ I + E + +E + ++ + E++
Sbjct: 453 VNKKQFNADDGSTLNSPNSIRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESS 512
Query: 520 RIREEIEALRSK 555
EIE+L+ K
Sbjct: 513 EDTSEIESLQGK 524
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 445 EQKDELENEKSQEWHDMELMQDENNRIREEIE 540
E K+E + EK + D E +ENN + E+I+
Sbjct: 4115 ENKEEADAEKDEPMQDFEDPLEENNTLDEDIQ 4146
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +1
Query: 331 NRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQD 510
N Q K+ + D+I+ + T + G A+ + ++Q + + + W D+ + +
Sbjct: 876 NNQKKLEDMNLDEILEHAEDHDTSNDVGGASMGGEEFLKQFEVTDYKADVSWDDIIPLTE 935
Query: 511 -----ENNRIREEIEALRSKYD 561
E +R+REE EAL+ + +
Sbjct: 936 REKFEEEDRLREEEEALKQEIE 957
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 0.87
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Frame = +1
Query: 253 NMAPLSPTPCAE--ISDDELVSISVRDLN-------RQLKMRGLTRDQIVRMKQRRRTLK 405
N P P P E + + + I +R L QLK RG TR+QI + R+
Sbjct: 380 NFLPSGPVPANEPMLKRESVDLIKIRQLAILFQQRASQLKARGATREQITEILNRQAIAA 439
Query: 406 NRGYAASCRIKRIEQKDELENEKSQEWHDME 498
A + R +L+ + Q+ M+
Sbjct: 440 GTDLATVMTVARNLHFQQLQMRQQQQQQQMK 470
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/87 (18%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 310 SISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWH 489
++ + + ++K +DQ+V + +N + +I +EQ+ + N +++E
Sbjct: 34 AVFISAIKTKVKDINALKDQLVLQEVNHEHKEN---VLTKKINFLEQQLQSSNNQAEESR 90
Query: 490 DM-ELMQDENNRIREEIEALRSKYDAL 567
++ ++++EN ++ +E ++DAL
Sbjct: 91 NLISVLRNENESLKTNLENQNKRFDAL 117
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +1
Query: 316 SVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDM 495
++ +LN + ++I + + + + Y R ++ +ELE++ S +
Sbjct: 821 AITELNEEFATSSEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSV 880
Query: 496 ELMQDENNRIREE 534
E +QDE N I+E+
Sbjct: 881 EELQDEMNSIKED 893
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 286 EISDDELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNR 411
E SDDE + IS++D +R K+R + +V Q R L+ +
Sbjct: 102 EDSDDERLMISLQDHSRLRKLRQYEDEDMVNGLQYARRLRTQ 143
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 336 ATQNARPHSRSDCKNETTSPDSKKQRLCRLVPYQAY 443
ATQ A PH+ +++ S S + + +PYQ Y
Sbjct: 542 ATQAAMPHTMGPSAHDSASAPSPHMQSQQALPYQYY 577
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 379 MKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSK 555
MK+RR +NR A+ CR K+ LE + ++ +++REE+ L+++
Sbjct: 268 MKRRRFLERNRIAASKCRQKKKLWTQNLEKTAHIACEQSKALRILVSQLREEVICLKNQ 326
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 445 EQKDELENEKSQEWHDMELMQDENNRIREEIEALRSKYDALN 570
++K ELE + + + + + + N + EE+E L+ + + N
Sbjct: 1366 KEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQAN 1407
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 556 ICFSTLQSLPLFYYFRPASVPYRAIPDFSRSRVHLSVL 443
+C + LP FY +P S IP FS+S +H V+
Sbjct: 1125 VCILLYKGLPPFYRQKPGS-----IPAFSKSLLHRKVV 1157
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Frame = +1
Query: 349 RGLTRDQIVRMKQRRRTLKNRG--------YAASCRIKRIEQKDELENEKSQEWHDMELM 504
+GLT+D I + Q+ + ++N+G +A I R+ Q+ + E
Sbjct: 12 KGLTKDNIQSLYQQWQVMRNQGATEENNPEFAQISSILRMVQRAHYARMQQMRNQSSEFP 71
Query: 505 QDENNRIREEIEAL 546
EN +R++ + L
Sbjct: 72 DAENTNLRKQQDTL 85
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +1
Query: 403 KNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRS 552
+NR A CR ++ + L+ + ++ E++ + + +REEI +L++
Sbjct: 481 RNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIVSLKT 530
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 8.1
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +1
Query: 286 EISDDELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKN-RGYAASC---RIKRIEQK 453
E DD++ IS + ++ L + R Q R +LK R AS R+K+ +
Sbjct: 90 EDCDDDISDISDKLGVLLYEIGELEEHMVDRYDQYRVSLKTIRDIEASVQPTRVKKEKLL 149
Query: 454 DELENEKSQEWHDMELMQDENNRIREEIEALRSKYDALNVLR 579
+ + + +S++ +L+ E +REE L ++ N+ R
Sbjct: 150 NSIYDVRSRDPESPKLITMEQELVREEAACLVAEAQLTNITR 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,214
Number of Sequences: 5004
Number of extensions: 39399
Number of successful extensions: 140
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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