Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n14f
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    28   1.2  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   1.6  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   6.6  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   6.6  

>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +2

Query: 359 HIRMLLD--VDDGDDEIRLVNKLTEAHVIKEKIPKMKVKFAAQIFSQRVSSAMRFLAKHK 532
           HI  ++D  +D+    + L+    ++ V+ + + ++ +    +I  Q +SSA+ +L KH 
Sbjct: 67  HIERIVDSFIDNEAGSVYLITSF-KSFVLSDVMDEISIDTKCKIVLQ-ISSALEYLEKHG 124

Query: 533 ILPEECSQTADFLLIFDKLFDSFNGHSY 616
           IL  +           + L DS NG +Y
Sbjct: 125 ILHRDIHPN-------NILLDSMNGPAY 145


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 469 ICCTNIQSKSLISYEIPCKTQNTS*GVFTD 558
           + CTNI +K +  YE  CK Q+   G++ D
Sbjct: 395 LTCTNIHNKPVSDYEKECKVQDI--GLYED 422


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 STCY*RKDPKNESEICCTNIQSKSLISYEIP 519
           S CY  ++ K + EIC    +SK  I Y +P
Sbjct: 221 SVCYVSQNFKEDMEICHEKPRSKLEICYALP 251


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +1

Query: 196 YFGCLDNGLNYAAHIEIDQPQLLSGIVPPSSMNNMIKLESVSYRRWCHEASKMGS 360
           Y   L N LNY+    +     +S +      N    L  V++ RWC + ++  S
Sbjct: 173 YSPALKNVLNYSQRERVANLANVSILKSQGLSNESRLLSLVNFERWCEKEAQRNS 227


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 264  QQLWLINFDVSCII*SVIKASEIAFHFRS 178
            Q+LW +N     ++       EI  H+RS
Sbjct: 1351 QELWALNIQADIVLRGASSLEEIVTHYRS 1379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,797
Number of Sequences: 5004
Number of extensions: 43109
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)