Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n13r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    28   0.10 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.9  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 186 LLLPEYDTRDKLQDRLLKAINYSKGFGLH*SYA 88
           +L P  D+RD+L  R L+A+N      +H S A
Sbjct: 417 VLFPSLDSRDELHPRELEAVNLGSACRIHGSPA 449


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 630 NGDNIFVTQENKKEFVDL 577
           NGD + +   N K FVDL
Sbjct: 175 NGDQVSLALYNNKNFVDL 192


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 555 HSVKNLHINLQIPFCFLV*QKYYLRSL 635
           HS+  + + +Q+PFC      +Y R L
Sbjct: 15  HSIIQIPVIIQLPFCGPNVIDHYFRDL 41


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 445 WKQGFRFPRAGKVDRIRWR 389
           +KQGF  P    + +I+WR
Sbjct: 20  YKQGFCQPTQRTMSKIQWR 38



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 208  GGKPVAVRAVPRDHKVQVAQ 267
            GGKP+AV+     H+ Q  Q
Sbjct: 1090 GGKPIAVQIQQSPHQQQQQQ 1109


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 622 ISVHFQFVKHISSEHVLV 675
           ++VH   + H++  HV+V
Sbjct: 474 VTVHGDVISHVNISHVMV 491


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 622 ISVHFQFVKHISSEHVLV 675
           ++VH   + H++  HV+V
Sbjct: 474 VTVHGDVISHVNISHVMV 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,681
Number of Sequences: 438
Number of extensions: 4153
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)