Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n13f
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   0.99 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   0.99 
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   1.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.0  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.3  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.0  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   7.0  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.0  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 461  KLFYKEARLCSSVTPNKVSRTD-SNSYEPSPSSTLGPNHKTHQR--IKRIQISHHRSQA 628
            +LFY+ +     V  NK+S TD    YE     TL    K ++R  I+ +++     QA
Sbjct: 3062 ELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKECKAYERSCIENVKLKKRTEQA 3120


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 118 CTLLMFTLSPYLCNWPFEITTGL 186
           CTL +F+  P + NW  + TTG+
Sbjct: 293 CTLYLFSHDPSVYNWSTQYTTGI 315


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 380 VNCDNRYCASSGAARNLSPNEAAAEAIKLFYKEARLCSSVTPNKVSRTDSN 532
           +N  +RY + S A   LSP   A+    L+  EA   +S TP+ + +   N
Sbjct: 387 INAQSRYASISSAV--LSPPSEASRKFSLYESEAISPTSGTPSNLEKGAGN 435


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 302  GNIMKRAAAKQLIEKYFYQLLDGC 373
            G+ +KR A    +  YF+Q+LD C
Sbjct: 1484 GHFLKRIAMNNYLCLYFWQVLDAC 1507


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 413 GAARNLSPNEAAAEAIKLFYKEARLCSSVTPNKVSRTDSNSYEPSPSSTLGPNH 574
           GA  ++ P+ A       F   A       P  V  ++ N Y P+PS T+ PN+
Sbjct: 251 GAKTSIPPSHAMQNPHNSFPASADRLQKNHP--VQSSNFNPYTPAPSITVPPNY 302


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 106 ISKICTLLMFTLSPYLCNWPFEITTGLLRIF 198
           I++ICT +M  L P    WP    T ++  F
Sbjct: 423 IARICTYIMLYLKPPSSPWPTRPPTEIITSF 453


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 359 LLDGCGNVNCDNRYCASSGAARNLSPNEAAAEAIKLFYKEARLCS 493
           +LD  G  N ++   ASS  +R  +PN  +     +F+K  ++C+
Sbjct: 287 VLDLNGPPNQESSSSASSYGSRTQTPNARSCSLNIVFHKHKKVCT 331


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 491 SSVTPNKVSRTDSNSYEPSPSSTLGPNH 574
           +S T ++ + T+ +S+E     T GPNH
Sbjct: 457 ASSTVSQQTETEMDSFEVKKDGTSGPNH 484


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 269 TPDIVEDQLTSGNIMKRAAAKQLIEKYFYQLLDGCG 376
           TP+  ED         +AAAK    KY +Q+++  G
Sbjct: 152 TPNAREDVTKHSGKKSKAAAKTAAVKYQFQIMESLG 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,023
Number of Sequences: 5004
Number of extensions: 55204
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)