Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13n13f
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.6  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 117 NFRNIFCVHLLD*TNNIYIVQHIILPIGYYC 25
           N++ ++C +      NI  ++ I +P+  YC
Sbjct: 95  NYKKLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 117 NFRNIFCVHLLD*TNNIYIVQHIILPIGYYC 25
           N++ ++C +      NI  ++ I +P+  YC
Sbjct: 95  NYKKLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 117 NFRNIFCVHLLD*TNNIYIVQHIILPIGYYC 25
           N++ ++C +      NI  ++ I +P+  YC
Sbjct: 95  NYKKLYCNNYRKLYYNINYIEQIPIPVPIYC 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 509  KVSRTDSNSYEPSPSSTLGPNHKTHQRI 592
            +V RTD+  Y     +T G +  THQ I
Sbjct: 1335 EVDRTDAGEYSCYVENTFGHDTVTHQLI 1362


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 524 DSNSYEPSPSSTLGPNHKTHQRIKRIQISHHRSQALRH 637
           ++NS   SPS+ L P H  +   ++ Q++    Q  +H
Sbjct: 91  NANSPVGSPSAALQPQHVVYGNPQQQQLAAETQQQQQH 128


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 618 RWCDIWILFIL*C 580
           R+CD WI F + C
Sbjct: 96  RFCDTWIAFDVMC 108


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 362 AVDKNIFQLTAWLR 321
           A +K +FQL AW +
Sbjct: 237 ATNKQLFQLVAWAK 250


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 362 AVDKNIFQLTAWLR 321
           A +K +FQL AW +
Sbjct: 237 ATNKQLFQLVAWAK 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,292
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)