Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13m22f
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 122 5e-29
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 114 8e-27
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 110 2e-25
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 106 3e-24
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 103 1e-23
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 97 1e-21
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 95 7e-21
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 93 3e-20
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 78 8e-16
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 76 3e-15
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 75 8e-15
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 69 4e-13
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 68 1e-12
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 67 2e-12
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 67 2e-12
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 66 5e-12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 65 6e-12
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 61 1e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 52 8e-08
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 43 4e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 42 7e-05
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.50
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 6.2
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 6.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 8.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 8.2
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 122 bits (293), Expect = 5e-29
Identities = 57/114 (50%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Frame = +3
Query: 249 NFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNR-VNLSIWDTAG 425
N K+VLLGD VGK+SL+LR+++D+F++ +T+ A FL + L I+ N V L IWDTAG
Sbjct: 14 NQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
Query: 426 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
QE++ +L P+YYRN+N AI+VYDIT S K K+W+KEL++ I + +AG
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAG 127
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 114 bits (275), Expect = 8e-27
Identities = 47/112 (41%), Positives = 74/112 (66%)
Frame = +3
Query: 252 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 431
FK++L+GD VGK+ LLLR+ +D + E +++T+ F + + G V L IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 432 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
+F + YYR ++G I+VYD+TD+DSF VK W++E+ + +N ++ G
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 110 bits (264), Expect = 2e-25
Identities = 48/114 (42%), Positives = 77/114 (67%)
Frame = +3
Query: 246 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 425
R FK+V LG+ VGKTSL+ R++ D+F+ + T+ FL+K + + V L +WDTAG
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 426 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
QE+F +L P Y R+S+ AI+VYDIT+ +SF + W+++++ G D+ +V+ G
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVG 123
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 106 bits (254), Expect = 3e-24
Identities = 45/112 (40%), Positives = 75/112 (66%)
Frame = +3
Query: 252 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 431
FK VL+GD VGK++LL+R+ ++FN + +T+ F + + ++ ++ IWDTAGQE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 432 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
++ A+ YYR + GA++VYDIT + SF V W+KEL++ S+I +++ G
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVG 122
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 103 bits (248), Expect = 1e-23
Identities = 43/111 (38%), Positives = 70/111 (63%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
K++L+GD VGK+ LLLR+ ED F +TT+ F + + ++G R+ L IWDTAGQE+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
F + YYR + G +L+YD+TD+ SF V+ W +++ ++ ++ G
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIG 121
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 97.5 bits (232), Expect = 1e-21
Identities = 45/115 (39%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNIN-GN---RVNLSIWDTA 422
K+VL G GK+ LL R+++++++++ T+ F ++ +++ GN R+ L IWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 423 GQEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
GQEKF ++ YYR + GA+LVYD+T++DSF ++ +W+ +++ M S I +V+AG
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAG 125
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 95.1 bits (226), Expect = 7e-21
Identities = 41/104 (39%), Positives = 66/104 (63%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
KVV+LGD VGKT L+ +++ KF+ ++ T+ A FL K + ++ V L +WDTAGQE+
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD 566
F +LG +YR ++ ++VY++ + SF V+NW +E D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQD 113
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 93.1 bits (221), Expect = 3e-20
Identities = 39/96 (40%), Positives = 64/96 (66%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
KV++LG+ VGKTS++ +Y+ KF++ + T+ A FL K + ++ V L +WDTAGQE+
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKE 542
F +LG +YR ++ +LVYD+ + SF + +W E
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDE 105
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 78.2 bits (184), Expect = 8e-16
Identities = 36/112 (32%), Positives = 65/112 (58%)
Frame = +3
Query: 252 FKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQE 431
FK+VL+GDG GKT+ + R++ +F +K++ TL + N + ++WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 432 KFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
K L YY I+++D+T +++ V +W ++L ++ +I +V+ G
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVC-ENIPIVLCG 120
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 76.2 bits (179), Expect = 3e-15
Identities = 35/107 (32%), Positives = 67/107 (62%)
Frame = +3
Query: 246 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 425
R +K+V++GDG VGK++L ++ I+ F +++ T++ ++ K+ I+G L + DTAG
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSY-RKKCEIDGEGALLDVLDTAG 65
Query: 426 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD 566
QE++ A+ Y R G +LVY+IT SF ++ + +++ ++ D
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKD 112
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 74.9 bits (176), Expect = 8e-15
Identities = 28/98 (28%), Positives = 57/98 (58%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
KV ++GD +GKTSL++ Y++ F+E+ TL F+ K ++I + SIWD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELK 548
F + P+ ++ + ++D++ + + +K W ++ +
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQAR 109
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 69.3 bits (162), Expect = 4e-13
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
K+V++GDG GKT LL+ + + F E ++ T+ ++ + ++G V L++WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIA 584
+ L P+ Y +S+ ++ + + DS V + W+ E+ S L++A
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVA 117
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 67.7 bits (158), Expect = 1e-12
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
K+V+LGDG GKTSLL + + F + + T+ +++ + ++GN + LS+WDTAGQE+
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKEL 545
+ L + Y +++ ++ + + DS V W+ E+
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV 111
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/112 (28%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
K+V++GDG GKT LL+ + + F E ++ T+ ++ + ++G + L++WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELKKMLGSDINLVIAG 587
+ L P+ Y +S+ ++ + + +S V + W+ E+ S++ +++ G
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFC-SNLPILLVG 117
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
++ +LG VGK+SL ++Y+E+ F E + T++ TF +K + G I DTAGQ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD-INLVIAG 587
+ L + +G +LVY IT + SF VK ++ G++ + +V+ G
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVG 118
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 65.7 bits (153), Expect = 5e-12
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
K+V++GDG GKTSLL + F +++ T+ +++ ++G V L++WDTAGQE+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSD-CRVDGKSVQLALWDTAGQEE 68
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVK-NWVKELKKM 554
+ L P+ Y ++ ++ + I DS V W++E+ +
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTL 109
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 65.3 bits (152), Expect = 6e-12
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNK-RLNINGNRVNLSIWDTAGQE 431
K+V++GDG GKT LL+ + F E+++ T+ ++ N + L++WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 432 KFHALGPIYYRNSNGAILVYDITDEDSFRKV-KNWVKELK 548
++ L P+ Y NSN +L + I S V + W E++
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ 115
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 61.3 bits (142), Expect = 1e-10
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAGQEK 434
K V++GDG VGKT LL+ Y +KF ++ T+ + + I L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYA-VTVMIGDEPYTLGLFDTAGQED 63
Query: 435 FHALGPIYYRNSNGAILVYDITDEDSFRKVK-NWVKEL 545
+ L P+ Y ++ ++ + +T SF VK W E+
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEV 101
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 51.6 bits (118), Expect = 8e-08
Identities = 30/109 (27%), Positives = 55/109 (50%)
Frame = +3
Query: 240 GARNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDT 419
G R +++++G GKT++L + K E +TT+ N + ++ ++WD
Sbjct: 14 GKREMRILMVGLDAAGKTTILYKL---KLGEI-VTTIPTIGFNVE-TVEYRNISFTVWDV 68
Query: 420 AGQEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSD 566
GQ+K L Y++N+ G I V D D + ++ +EL++ML D
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRE---RISEAHEELQRMLNED 114
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 42.7 bits (96), Expect = 4e-05
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +3
Query: 246 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 425
R +V+LLG GKT++L + + NE T F + L + G R +IWD G
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTF---GFQIRTLEVEGLR--FTIWDIGG 69
Query: 426 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKEL---KKMLGSDINLVIA 584
Q+ Y+ ++ I V D D+ + +N ++EL +K+L + I LV+A
Sbjct: 70 QKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSI-LVLA 124
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 41.9 bits (94), Expect = 7e-05
Identities = 22/94 (23%), Positives = 43/94 (45%)
Frame = +3
Query: 246 RNFKVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNINGNRVNLSIWDTAG 425
+ ++++LG GKT++L + K N+ + T+ N + + ++WD G
Sbjct: 20 KEMRILMLGLDAAGKTTILYKL---KLNQS-VVTIPTVGFNVE-TVTYKNIKFNVWDVGG 74
Query: 426 QEKFHALGPIYYRNSNGAILVYDITDEDSFRKVK 527
Q+K L Y+ + G I V D D + + +
Sbjct: 75 QDKIRPLWRHYFTGTKGLIFVVDSADSNRISEAR 108
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.50
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +3
Query: 255 KVVLLGDGCVGKTSLLLRYIEDKFNEKHLTTLQATFLNKRLNIN--GNRVNLSIWDTAGQ 428
KV+L+G GK+S+ + + K L AT + ++ GN V L++WD GQ
Sbjct: 4 KVLLMGRSGSGKSSMR-SIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 429 EKF-----HALGPIYYRNSNGAILVYDITDED 509
E F A +RN I V+D+ +
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 503 ISNIVNQNRTIRVSVVYWSQSMKLLLASCIPNGKIDTISINIQ 375
++ + Q+ V V W ++ LLL + K+D ++++IQ
Sbjct: 203 VNQVTQQHPNDMVLCVQWLANVSLLLFYLKKDNKLDDLTVDIQ 245
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 522 VKNWVKELKKMLGSD 566
VKNW EL K LG D
Sbjct: 335 VKNWANELVKWLGKD 349
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 545 QFFHPIFYLSK*IFISNIVNQNRTIRVSVVYW 450
QFFH I++ IF+ +T+ + W
Sbjct: 1141 QFFHTIYHTDTNIFVGAPTGSGKTMAAELATW 1172
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 423 GQEKFHALGPIYYRNSNGAILVYDITDEDSFRKVKNWVKELKKMLGSDINLVIAG 587
G+E+F PI++R SN + + E + +KN+ K+ N+++ G
Sbjct: 355 GRERFKICEPIFHRPSNETVSL----PEAIYITIKNYAANYKRRNDLWENIIVLG 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,400
Number of Sequences: 5004
Number of extensions: 43229
Number of successful extensions: 139
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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