Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13m20r
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.41 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 399 PLTVEPRVVGSILISGKHSCDEQVRFF-VWVSII 301
           P TV+  + G+I     HSCD  +  + VW++ +
Sbjct: 563 PYTVDAAIYGNISHFINHSCDPNLAVYGVWINCL 596


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 561 NRWIKTFKSNFFNTTDEIVQYLLH 490
           N W+  F  + +   +E  QY LH
Sbjct: 162 NNWLSVFWGSAWQWNEERKQYYLH 185


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 368 EPTTLGSTVRGLLMHPNKIVYFTQQL 445
           E  T+   + GL  HP  +V+FT  L
Sbjct: 873 ETRTINCEIGGL-QHPGAVVWFTVSL 897


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 644 CKPIITEILVTAW 682
           C+P +T  +VT+W
Sbjct: 652 CQPGVTAFIVTSW 664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,908
Number of Sequences: 438
Number of extensions: 3558
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)