Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13m07f
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   4.2  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   5.6  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   5.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.4  

>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 508 SSNQMEASGLAKPPSSCSF*GKSQWNKVIIGVMPYF 401
           ++   E +G+ +  S C   GK+   K+++ V+PYF
Sbjct: 22  TAEDREGNGVQEVESLCMECGKNGTTKLLLTVIPYF 57


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 448 LRSCRNWEASPIHWLPFGLKTTRAWSTRISVTESNIGSPL 567
           LR+C+ +   PI+W+ +G  T    S    +   N+ + L
Sbjct: 357 LRACKTFLFYPIYWVCYGQMTNNLISQAGQMQTGNVSNDL 396


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 463 NWEASPIHWLPFGLKTTRAWSTR 531
           NWEA+P H LP  L  TR +  R
Sbjct: 11  NWEATPYH-LPIFLAQTRGYYER 32


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 486  LASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGYGSVH 611
            LA++  ED  RV         KH   +NEP +   +G    H
Sbjct: 1042 LAAVVGEDVGRVAILQGPMAAKHSTKVNEPAKELLDGINETH 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,739
Number of Sequences: 5004
Number of extensions: 50020
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)