Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13m06r
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.26 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.60 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 476 PEWLQSAASWLTLMPNSIYDVLTH 405
           P+WLQ  A WL   PN  YD +T+
Sbjct: 652 PKWLQVLALWLNHSPN--YDQVTN 673


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 305 YRAALENILDSLDAGVRLKGYMAW 234
           +R  L   LDS   GV LKG+  W
Sbjct: 490 FRQRLRKELDSKTGGVNLKGHAHW 513


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 401 KNKYNDPIFYVTENG 357
           +N YND  FY   NG
Sbjct: 135 ENNYNDNYFYSKSNG 149


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 153 PPSHPAQVRVRLQGDLEEQGHRP 85
           PP+ PA++R   + + E   +RP
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRP 47


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -2

Query: 769 AELKRQAEWVSMSILYFLKKVVSRKN*LPE*LKKAQSTATHAPDSRSS 626
           A+    +EWV +  LY+L  ++       +  ++AQ +   +P + +S
Sbjct: 323 ADTHEMSEWVKVVFLYWLPCILRMSRPSDKEEREAQKSQKPSPVTGAS 370


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 228 QTPGHVALEPHSGIETIQNVL 290
           Q P  + + P SGI  +Q +L
Sbjct: 58  QNPSQMMISPASGIHQMQQLL 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,606
Number of Sequences: 438
Number of extensions: 4847
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)