Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13m06f
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   3.3  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   4.4  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   5.8  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.8  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.8  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   7.6  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   7.6  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 171 WDYMTHNNPTVIADESNGDIAADSYHN 251
           W  +TH+ P+V+AD++   I ++ +H+
Sbjct: 244 WVDLTHSLPSVVADDAADYIPSEGFHH 270


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 419 NDFSVSLGLASKVAGIGRFCQS 484
           N+F  + GLAS  AG   FC++
Sbjct: 113 NNFPTAAGLASSAAGYAAFCEA 134


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 162 ENIWDYMTHNNPTVIADESNGDIAADSYHNV 254
           ++IW+ M ++NP+VI + ++    A  Y  +
Sbjct: 321 QSIWETMNNSNPSVIPESTSSREPAARYRKI 351


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 339 FANEVNEAGVDYYNRLINEMLKYNITPMISLYHWDLPQK 455
           F NE + A + Y   L++ ++ + +TP I+LY+  + +K
Sbjct: 24  FPNEYSNADIAYV--LLSTVVVFTVTPGIALYYAGMVRK 60


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 369 DYYNRLINEMLKYNITPMI 425
           D ++RL++ ++KYN+T MI
Sbjct: 357 DVFSRLMSALVKYNMTEMI 375


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 476 KTSQFLQLLRQVPVIQRNHWSNIVFQHLVD*PVVVVDSCFVD 351
           KT+  LQ L Q P+   N WSN   + L+   ++     F D
Sbjct: 48  KTNSLLQTLFQTPLPNANIWSNQAIRILMAFNILANGGWFFD 89


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 162 PLFHLHPKLLRSGMRLWLSQTKSHLEISSAA*STVQSNTPPTTLT 28
           P F LH  LL  G++L LS  K    ISS   +    +  P+T T
Sbjct: 3   PRFLLHGALLALGIQLCLSIGKITGHISSIEATAADIHDAPSTTT 47


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 108 SQTKSHLEISSAA*STVQSNTPPTTLTAGTS 16
           S T  ++ +SS+  STV S+TP +T+ +GTS
Sbjct: 118 SSTTDNVIVSSSISSTV-SSTPVSTIYSGTS 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,888
Number of Sequences: 5004
Number of extensions: 61414
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)