Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13m05f
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 30 0.24
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 30 0.31
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 29 0.73
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 28 1.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 2.9
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 6.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 6.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 9.0
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 420 SDSFWEPGN--YKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLRGWAKKWNDLIEK 593
S+ FW + Y R D + EL++ ERA+IE+ YAK + ++ +E
Sbjct: 19 SNYFWGANDEGYHALLSRFSDVKHINEELRSFYHERANIEEDYAKRMAKLSRTTFSSLET 78
Query: 594 G 596
G
Sbjct: 79 G 79
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 444 NYKRTTKRVDDGHRLCSELQTLVQERADIEKAYAKSLRGWAKKWND 581
++K +++G + ++Q +ER+ IEK YA+ L + K+ +
Sbjct: 15 DFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQKLASLSNKYGE 60
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.73
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 455 DHQESRRWTSTVQRTSNPGPRACRY---RESVREKPQRMG*EME 577
D + SRR+ + +R +P R RY RESVRE+ R E E
Sbjct: 42 DERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHE 85
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 513 QERADIEKAYAKSLRGWAKKWNDLIEKG 596
QER+D+E ++K + WN L++KG
Sbjct: 45 QERSDLEHIHSKPKKDSLLSWNILLKKG 72
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 201 LLQRHNKHSTSNNTYNLVTNKFTNLNI 121
+L++ +KH+TSN T + KF +++
Sbjct: 432 ILEKKSKHATSNGTVETLNTKFRLIHV 458
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -2
Query: 364 SHTAPN*ANRTVWRCLYSFENQRLIDALSSFSRSIIQNDQLNPDQ*SNILFYTDPITA-T 188
SHT+ N +N +++ + E++++I ++ S I+N L + ++LF D + A T
Sbjct: 5 SHTSSNKSNGSIFT--KADESEKVISRSNTASPISIENTHLTKSERDSLLFRLDLVLAPT 62
Query: 187 QQTFYIEQHLQFSH 146
Y+ L S+
Sbjct: 63 IMILYLVAFLDRSN 76
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 495 ELQTLVQERADIEKAYAKSLRGWAKKWNDLIEKGPEY 605
EL L ++ DIE+ Y L ++W + +++ EY
Sbjct: 504 ELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEY 540
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 298 VDSRTSKGIATLFGSLS*GRCVSVAPPCRTTATSMRCSQPLPTRSGS 438
VD T + S S G ++A P TTA ++ P PT S S
Sbjct: 755 VDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLIDVPTPTASSS 801
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 364 SVAPPCRTTATSMRCSQPLPTRSGSLVTTRGPP 462
S PP +T+++ S PLP+ S S T+ P
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 325 RCLYSFENQRLIDALSSFSRSIIQNDQLNPD 233
R Y F+++RL +ALSSF I ++ +
Sbjct: 1000 RVAYHFKSKRLENALSSFKNQISNQSPMSEE 1030
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,710
Number of Sequences: 5004
Number of extensions: 54683
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -